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Using Data compression options in "workflow.swift" #11

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abidmalikwaterloo opened this issue Aug 4, 2017 · 0 comments
Open

Using Data compression options in "workflow.swift" #11

abidmalikwaterloo opened this issue Aug 4, 2017 · 0 comments

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@abidmalikwaterloo
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@jychoi-hpc @kshitij-v-mehta @mw70
When I used the following in my workflow.swift:

arguments2 = split("heat.bp staged.bp FLEXPATH "" MPI "" "T,dt" "SZ:accuracy=0.001"", " "); ( try the other compression as well)

It breaks. The error is given below. I tried on different machines and also tried to rebuild every thing from scratch. I see that some people have successfully run this options. tried with TAU and without TAU as well.


rank 0: Write variable 12: dT
*** Error in `stage_write/stage_write': corrupted size vs. prev_size: 0x000000000330b740 ***
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f21229d77e5]
/lib/x86_64-linux-gnu/libc.so.6(+0x80dfb)[0x7f21229e0dfb]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x4c)[0x7f21229e453c]
/lib/x86_64-linux-gnu/libz.so.1(deflateEnd+0x4e)[0x7f212341708e]
/home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/sz-develop-brcu2sscr2oucsvopcpncy7z2xdmfsic/lib/libsz.so.1(zlib_compress5+0x144)[0x7f21231ddf04]
/home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/sz-develop-brcu2sscr2oucsvopcpncy7z2xdmfsic/lib/libsz.so.1(SZ_compress_args_double+0x2f5)[0x7f21231ef4f5]
/home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/sz-develop-brcu2sscr2oucsvopcpncy7z2xdmfsic/lib/libsz.so.1(SZ_compress_args+0x43)[0x7f21231f4bb3]
/home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/sz-develop-brcu2sscr2oucsvopcpncy7z2xdmfsic/lib/libsz.so.1(SZ_compress+0x4c)[0x7f21231f4e1c]
stage_write/stage_write[0x4aca62]
stage_write/stage_write[0x4a95d3]
stage_write/stage_write[0x4a849e]
stage_write/stage_write[0x40b580]
stage_write/stage_write[0x40baf1]
stage_write/stage_write[0x40c0ed]
stage_write/stage_write[0x4090e7]
stage_write/stage_write[0x408c77]
stage_write/stage_write[0x407c05]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f2122980830]
stage_write/stage_write[0x4064d9]
======= Memory map: ========
00400000-005e5000 r-xp 00000000 08:03 97655616 /home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/savanna-develop-5ivzn2ix66rrsufmfqwr5hcug6nah6go/Heat_Transfer/stage_write/stage_write
007e4000-007e6000 r--p 001e4000 08:03 97655616 /home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/savanna-develop-5ivzn2ix66rrsufmfqwr5hcug6nah6go/Heat_Transfer/stage_write/stage_write
007e6000-007f0000 rw-p 001e6000 08:03 97655616 /home/amalik/spack/opt/spack/linux-ubuntu16-x86_64/gcc-5.4.0/savanna-develop-5ivzn2ix66rrsufmfqwr5hcug6nah6go/Heat_Transfer/stage_write/stage_write
007f0000-007f7000 rw-p 00000000 00:00 0
0174d000-033fc000 rw-p 00000000 00:00 0 [heap]
7f2114000000-7f2114021000 rw-p 00000000 00:00 0
7f2114021000-7f2118000000 ---p 00000000 00:00 0
7f211c000000-7f211c021000 rw-p 00000000 00:00 0
7f211c021000-7f2120000000 ---p 00000000 00:00 0
7f2120404000-7f2120405000 ---p 00000000 00:00 0
7f2120405000-7f2120c05000 rw-p 00000000 00:00 0
7f2120c05000-7f2120c1c000 r-xp 00000000 08:03 72617629 /lib/x86_64-linux-gnu/libresolv-2.23.so
7f2120c1c000-7f2120e1c000 ---p 00017000 08:03 72617629 /lib/x86_64-linux-gnu/libresolv-2.23.so
7f2120e1c000-7f2120e1d000 r--p 00017000 08:03 72617629 /lib/x86_64-linux-gnu/libresolv-2.23.so
7f2120e1d000-7f2120e1e000 rw-p 00018000 08:03 72617629 /lib/x86_64-linux-gnu/libresolv-2.23.so
7f2120e1e000-7f2120e20000 rw-p 00000000 00:00 0
7f2120e20000-7f2120e25000 r-xp 00000000 08:03 72617595 /lib/x86_64-linux-gnu/libnss_dns-2.23.so
7f2120e25000-7f2121025000 ---p 00005000 08:03 72617595 /lib/x86_64-linux-gnu/libnss_dns-2.23.so
7f2121025000-7f2121026000 r--p 00005000 08:03 72617595 /lib/x86_64-linux-gnu/libnss_dns-2.23.so
7f2121026000-7f2121027000 rw-p 00006000 08:03 72617595 /lib/x86_64-linux-gnu/libnss_dns-2.23.so

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