packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2022},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2022},
  note = {R package version 0.29},
  url = {https://CRAN.R-project.org/package=bookdown},
}

@Manual{R-broom,
  title = {broom: Convert Statistical Objects into Tidy Tibbles},
  author = {David Robinson and Alex Hayes and Simon Couch},
  year = {2022},
  note = {R package version 1.0.1},
  url = {https://CRAN.R-project.org/package=broom},
}

@Manual{R-car,
  title = {car: Companion to Applied Regression},
  author = {John Fox and Sanford Weisberg and Brad Price},
  year = {2022},
  note = {R package version 3.1-0},
  url = {https://CRAN.R-project.org/package=car},
}

@Manual{R-carData,
  title = {carData: Companion to Applied Regression Data Sets},
  author = {John Fox and Sanford Weisberg and Brad Price},
  year = {2022},
  note = {R package version 3.0-5},
  url = {https://CRAN.R-project.org/package=carData},
}

@Manual{R-colorspace,
  title = {colorspace: A Toolbox for Manipulating and Assessing Colors and Palettes},
  author = {Ross Ihaka and Paul Murrell and Kurt Hornik and Jason C. Fisher and Reto Stauffer and Claus O. Wilke and Claire D. McWhite and Achim Zeileis},
  year = {2022},
  note = {R package version 2.0-3},
  url = {https://CRAN.R-project.org/package=colorspace},
}

@Manual{R-corrplot,
  title = {corrplot: Visualization of a Correlation Matrix},
  author = {Taiyun Wei and Viliam Simko},
  year = {2021},
  note = {R package version 0.92},
  url = {https://github.com/taiyun/corrplot},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller},
  year = {2022},
  note = {R package version 1.0.10},
  url = {https://CRAN.R-project.org/package=dplyr},
}

@Manual{R-effects,
  title = {effects: Effect Displays for Linear, Generalized Linear, and Other Models},
  author = {John Fox and Sanford Weisberg and Brad Price and Michael Friendly and Jangman Hong},
  year = {2022},
  note = {R package version 4.2-2},
  url = {https://CRAN.R-project.org/package=effects},
}

@Manual{R-effectsize,
  title = {effectsize: Indices of Effect Size},
  author = {Mattan S. Ben-Shachar and Dominique Makowski and Daniel Lüdecke and Indrajeet Patil and Brenton M. Wiernik},
  year = {2022},
  note = {R package version 0.8.0},
  url = {https://easystats.github.io/effectsize/},
}

@Manual{R-emmeans,
  title = {emmeans: Estimated Marginal Means, aka Least-Squares Means},
  author = {Russell V. Lenth},
  year = {2022},
  note = {R package version 1.8.1-1},
  url = {https://github.com/rvlenth/emmeans},
}

@Manual{R-forcats,
  title = {forcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2022},
  note = {R package version 0.5.2},
  url = {https://CRAN.R-project.org/package=forcats},
}

@Manual{R-furniture,
  title = {furniture: Furniture for Quantitative Scientists},
  author = {Tyson S. Barrett and Emily Brignone and Daniel J. Laxman},
  year = {2022},
  note = {R package version 1.9.12},
  url = {https://CRAN.R-project.org/package=furniture},
}

@Manual{R-gee,
  title = {gee: Generalized Estimation Equation Solver},
  author = {Vincent J Carey and Thomas Lumley and Brian Ripley},
  year = {2022},
  note = {R package version 4.13-24},
  url = {https://CRAN.R-project.org/package=gee},
}

@Manual{R-geepack,
  title = {geepack: Generalized Estimating Equation Package},
  author = {Søren Højsgaard and Ulrich Halekoh and Jun Yan},
  year = {2022},
  note = {R package version 1.3.9},
  url = {https://CRAN.R-project.org/package=geepack},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2022},
  note = {R package version 3.3.6},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-ggResidpanel,
  title = {ggResidpanel: Panels and Interactive Versions of Diagnostic Plots using
ggplot2},
  author = {Katherine Goode and Kathleen Rey},
  year = {2019},
  note = {R package version 0.3.0},
  url = {https://goodekat.github.io/ggResidpanel/},
}

@Manual{R-gridExtra,
  title = {gridExtra: Miscellaneous Functions for "Grid" Graphics},
  author = {Baptiste Auguie},
  year = {2017},
  note = {R package version 2.3},
  url = {https://CRAN.R-project.org/package=gridExtra},
}

@Manual{R-haven,
  title = {haven: Import and Export SPSS, Stata and SAS Files},
  author = {Hadley Wickham and Evan Miller and Danny Smith},
  year = {2022},
  note = {R package version 2.5.1},
  url = {https://CRAN.R-project.org/package=haven},
}

@Manual{R-HLMdiag,
  title = {HLMdiag: Diagnostic Tools for Hierarchical (Multilevel) Linear Models},
  author = {Adam Loy and Jaylin Lowe and Jack Moran},
  year = {2021},
  note = {R package version 0.5.0},
  url = {https://github.com/aloy/HLMdiag},
}

@Manual{R-HSAUR,
  title = {HSAUR: A Handbook of Statistical Analyses Using R (1st Edition)},
  author = {Brian S. Everitt and Torsten Hothorn},
  year = {2022},
  note = {R package version 1.3-10},
  url = {https://CRAN.R-project.org/package=HSAUR},
}

@Manual{R-interactions,
  title = {interactions: Comprehensive, User-Friendly Toolkit for Probing Interactions},
  author = {Jacob A. Long},
  year = {2021},
  note = {R package version 1.1.5},
  url = {https://interactions.jacob-long.com},
}

@Manual{R-kableExtra,
  title = {kableExtra: Construct Complex Table with kable and Pipe Syntax},
  author = {Hao Zhu},
  year = {2021},
  note = {R package version 1.3.4},
  url = {https://CRAN.R-project.org/package=kableExtra},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2022},
  note = {R package version 1.40},
  url = {https://yihui.org/knitr/},
}

@Manual{R-lme4,
  title = {lme4: Linear Mixed-Effects Models using Eigen and S4},
  author = {Douglas Bates and Martin Maechler and Ben Bolker and Steven Walker},
  year = {2022},
  note = {R package version 1.1-30},
  url = {https://github.com/lme4/lme4/},
}

@Manual{R-lmerTest,
  title = {lmerTest: Tests in Linear Mixed Effects Models},
  author = {Alexandra Kuznetsova and Per {Bruun Brockhoff} and Rune {Haubo Bojesen Christensen}},
  year = {2020},
  note = {R package version 3.1-3},
  url = {https://github.com/runehaubo/lmerTestR},
}

@Manual{R-Matrix,
  title = {Matrix: Sparse and Dense Matrix Classes and Methods},
  author = {Douglas Bates and Martin Maechler and Mikael Jagan},
  year = {2022},
  note = {R package version 1.5-1},
  url = {https://CRAN.R-project.org/package=Matrix},
}

@Manual{R-MuMIn,
  title = {MuMIn: Multi-Model Inference},
  author = {Kamil Bartoń},
  year = {2022},
  note = {R package version 1.47.1},
  url = {https://CRAN.R-project.org/package=MuMIn},
}

@Manual{R-naniar,
  title = {naniar: Data Structures, Summaries, and Visualisations for Missing Data},
  author = {Nicholas Tierney and Di Cook and Miles McBain and Colin Fay},
  year = {2021},
  note = {R package version 0.6.1},
  url = {https://github.com/njtierney/naniar},
}

@Manual{R-nlme,
  title = {nlme: Linear and Nonlinear Mixed Effects Models},
  author = {José Pinheiro and Douglas Bates and {R Core Team}},
  year = {2022},
  note = {R package version 3.1-160},
  url = {https://svn.r-project.org/R-packages/trunk/nlme/},
}

@Manual{R-optimx,
  title = {optimx: Expanded Replacement and Extension of the optim Function},
  author = {John C Nash and Ravi Varadhan},
  year = {2022},
  note = {R package version 2022-4.30},
  url = {https://CRAN.R-project.org/package=optimx},
}

@Manual{R-pander,
  title = {pander: An R Pandoc Writer},
  author = {Gergely Daróczi and Roman Tsegelskyi},
  year = {2022},
  note = {R package version 0.6.5},
  url = {https://rapporter.github.io/pander/},
}

@Manual{R-patchwork,
  title = {patchwork: The Composer of Plots},
  author = {Thomas Lin Pedersen},
  year = {2022},
  note = {R package version 1.1.2},
  url = {https://CRAN.R-project.org/package=patchwork},
}

@Manual{R-performance,
  title = {performance: Assessment of Regression Models Performance},
  author = {Daniel Lüdecke and Dominique Makowski and Mattan S. Ben-Shachar and Indrajeet Patil and Philip Waggoner and Brenton M. Wiernik},
  year = {2022},
  note = {R package version 0.10.0},
  url = {https://easystats.github.io/performance/},
}

@Manual{R-psych,
  title = {psych: Procedures for Psychological, Psychometric, and Personality
Research},
  author = {William Revelle},
  year = {2022},
  note = {R package version 2.2.9},
  url = {https://personality-project.org/r/psych/
https://personality-project.org/r/psych-manual.pdf},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Lionel Henry and Hadley Wickham},
  year = {2022},
  note = {R package version 0.3.5},
  url = {https://CRAN.R-project.org/package=purrr},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
  year = {2022},
  note = {R package version 2.1.3},
  url = {https://CRAN.R-project.org/package=readr},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2022},
  note = {R package version 2.17},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Manual{R-sjPlot,
  title = {sjPlot: Data Visualization for Statistics in Social Science},
  author = {Daniel Lüdecke},
  year = {2022},
  note = {R package version 2.8.11},
  url = {https://strengejacke.github.io/sjPlot/},
}

@Manual{R-sjstats,
  title = {sjstats: Collection of Convenient Functions for Common Statistical
Computations},
  author = {Daniel Lüdecke},
  year = {2021},
  note = {R package version 0.18.1},
  url = {https://strengejacke.github.io/sjstats/},
}

@Manual{R-stargazer,
  title = {stargazer: Well-Formatted Regression and Summary Statistics Tables},
  author = {Marek Hlavac},
  year = {2022},
  note = {R package version 5.2.3},
  url = {https://CRAN.R-project.org/package=stargazer},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2022},
  note = {R package version 1.4.1},
  url = {https://CRAN.R-project.org/package=stringr},
}

@Manual{R-texreg,
  title = {texreg: Conversion of R Regression Output to LaTeX or HTML Tables},
  author = {Philip Leifeld},
  year = {2022},
  note = {R package version 1.38.6},
  url = {https://github.com/leifeld/texreg/},
}

@Manual{R-texreghelpr,
  title = {texreghelpr: Extract Generalized REgression Output for Use in `texreg` tables},
  author = {Sarah Schwartz},
  year = {2022},
  note = {R package version 0.1.0},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2022},
  note = {R package version 3.1.8},
  url = {https://CRAN.R-project.org/package=tibble},
}

@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Maximilian Girlich},
  year = {2022},
  note = {R package version 1.2.1},
  url = {https://CRAN.R-project.org/package=tidyr},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the Tidyverse},
  author = {Hadley Wickham},
  year = {2022},
  note = {R package version 1.3.2},
  url = {https://CRAN.R-project.org/package=tidyverse},
}

@Manual{R-VIM,
  title = {VIM: Visualization and Imputation of Missing Values},
  author = {Matthias Templ and Alexander Kowarik and Andreas Alfons and Gregor {de Cillia} and Wolfgang Rannetbauer},
  year = {2022},
  note = {R package version 6.2.2},
  url = {https://github.com/statistikat/VIM},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Book{car2019,
  title = {An {R} Companion to Applied Regression},
  edition = {Third},
  author = {John Fox and Sanford Weisberg},
  year = {2019},
  publisher = {Sage},
  address = {Thousand Oaks {CA}},
  url = {https://socialsciences.mcmaster.ca/jfox/Books/Companion/},
}

@Article{colorspace2020a,
  title = {{colorspace}: A Toolbox for Manipulating and Assessing Colors and Palettes},
  author = {Achim Zeileis and Jason C. Fisher and Kurt Hornik and Ross Ihaka and Claire D. McWhite and Paul Murrell and Reto Stauffer and Claus O. Wilke},
  journal = {Journal of Statistical Software},
  year = {2020},
  volume = {96},
  number = {1},
  pages = {1--49},
  doi = {10.18637/jss.v096.i01},
}

@Article{colorspace2009a,
  title = {Escaping {RGB}land: Selecting Colors for Statistical Graphics},
  author = {Achim Zeileis and Kurt Hornik and Paul Murrell},
  journal = {Computational Statistics \& Data Analysis},
  year = {2009},
  volume = {53},
  number = {9},
  pages = {3259--3270},
  doi = {10.1016/j.csda.2008.11.033},
}

@Article{colorspace2009b,
  title = {Somewhere over the Rainbow: How to Make Effective Use of Colors in Meteorological Visualizations},
  author = {Reto Stauffer and Georg J. Mayr and Markus Dabernig and Achim Zeileis},
  journal = {Bulletin of the American Meteorological Society},
  year = {2009},
  volume = {96},
  number = {2},
  pages = {203--216},
  doi = {10.1175/BAMS-D-13-00155.1},
}

@Manual{corrplot2021,
  title = {R package 'corrplot': Visualization of a Correlation Matrix},
  author = {Taiyun Wei and Viliam Simko},
  year = {2021},
  note = {(Version 0.92)},
  url = {https://github.com/taiyun/corrplot},
}

@Book{effects2019,
  title = {An R Companion to Applied Regression},
  edition = {3rd},
  author = {John Fox and Sanford Weisberg},
  year = {2019},
  publisher = {Sage},
  address = {Thousand Oaks CA},
  url = {https://socialsciences.mcmaster.ca/jfox/Books/Companion/index.html},
}

@Article{effects2018,
  title = {Visualizing Fit and Lack of Fit in Complex Regression Models with Predictor Effect Plots and Partial Residuals},
  author = {John Fox and Sanford Weisberg},
  journal = {Journal of Statistical Software},
  year = {2018},
  volume = {87},
  number = {9},
  pages = {1--27},
  doi = {10.18637/jss.v087.i09},
}

@Article{effects2003,
  title = {Effect Displays in {R} for Generalised Linear Models},
  author = {John Fox},
  journal = {Journal of Statistical Software},
  year = {2003},
  volume = {8},
  number = {15},
  pages = {1--27},
  doi = {10.18637/jss.v008.i15},
}

@Article{effects2009,
  title = {Effect Displays in {R} for Multinomial and Proportional-Odds Logit Models: Extensions to the {effects} Package},
  author = {John Fox and Jangman Hong},
  journal = {Journal of Statistical Software},
  year = {2009},
  volume = {32},
  number = {1},
  pages = {1--24},
  doi = {10.18637/jss.v032.i01},
}

@Article{effectsize2020,
  title = {{e}ffectsize: Estimation of Effect Size Indices and Standardized Parameters},
  author = {Mattan S. Ben-Shachar and Daniel Lüdecke and Dominique Makowski},
  year = {2020},
  journal = {Journal of Open Source Software},
  volume = {5},
  number = {56},
  pages = {2815},
  publisher = {The Open Journal},
  doi = {10.21105/joss.02815},
  url = {https://doi.org/10.21105/joss.02815},
}

@Article{RJ-2017-037,
  title = {Furniture for Quantitative Scientists},
  author = {Tyson S. Barrett and Emily Brignone},
  year = {2017},
  journal = {The R Journal},
  volume = {9},
  number = {2},
  doi = {10.32614/RJ-2017-037},
  url = {https://journal.r-project.org/archive/2017/RJ-2017-037/RJ-2017-037.pdf},
  pages = {142--148},
}

@Article{geepack2006,
  title = {The R Package geepack for Generalized Estimating Equations},
  author = {Ulrich Halekoh and Søren Højsgaard and Jun Yan},
  year = {2006},
  journal = {Journal of Statistical Software},
  volume = {15/2},
  pages = {1--11},
}

@Article{geepack2004,
  title = {Estimating Equations for Association Structures},
  author = {Jun Yan and Jason P. Fine},
  year = {2004},
  journal = {Statistics in Medicine},
  volume = {23},
  pages = {859--880},
}

@Article{geepack2002,
  title = {geepack: Yet Another Package for Generalized Estimating Equations},
  author = {Jun Yan},
  year = {2002},
  journal = {R-News},
  volume = {2/3},
  pages = {12--14},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Article{HLMdiag2014,
  title = {{HLMdiag}: A Suite of Diagnostics for Hierarchical Linear Models in {R}},
  author = {Adam Loy and Heike Hofmann},
  journal = {Journal of Statistical Software},
  year = {2014},
  volume = {56},
  number = {5},
  pages = {1--28},
  url = {https://www.jstatsoft.org/article/view/v056i05},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Article{lme42015,
  title = {Fitting Linear Mixed-Effects Models Using {lme4}},
  author = {Douglas Bates and Martin M{\"a}chler and Ben Bolker and Steve Walker},
  journal = {Journal of Statistical Software},
  year = {2015},
  volume = {67},
  number = {1},
  pages = {1--48},
  doi = {10.18637/jss.v067.i01},
}

@Article{lmerTest2017,
  title = {{lmerTest} Package: Tests in Linear Mixed Effects Models},
  author = {Alexandra Kuznetsova and Per B. Brockhoff and Rune H. B. Christensen},
  journal = {Journal of Statistical Software},
  year = {2017},
  volume = {82},
  number = {13},
  pages = {1--26},
  doi = {10.18637/jss.v082.i13},
}

@Book{nlme2000,
  title = {Mixed-Effects Models in S and S-PLUS},
  author = {José C. Pinheiro and Douglas M. Bates},
  year = {2000},
  publisher = {Springer},
  address = {New York},
  doi = {10.1007/b98882},
}

@Article{optimx2011,
  title = {Unifying Optimization Algorithms to Aid Software System Users: {optimx} for {R}},
  author = {John C. Nash and Ravi Varadhan},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {43},
  number = {9},
  pages = {1--14},
  doi = {10.18637/jss.v043.i09},
}

@Article{optimx2014,
  title = {On Best Practice Optimization Methods in {R}},
  author = {John C. Nash},
  journal = {Journal of Statistical Software},
  year = {2014},
  volume = {60},
  number = {2},
  pages = {1--14},
  doi = {10.18637/jss.v060.i02},
}

@Article{performance2021,
  title = {{performance}: An {R} Package for Assessment, Comparison and Testing of Statistical Models},
  author = {Daniel Lüdecke and Mattan S. Ben-Shachar and Indrajeet Patil and Philip Waggoner and Dominique Makowski},
  year = {2021},
  journal = {Journal of Open Source Software},
  volume = {6},
  number = {60},
  pages = {3139},
  doi = {10.21105/joss.03139},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  note = {ISBN 9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Manual{sjstats2021,
  title = {sjstats: Statistical Functions for Regression Models (Version 0.18.1)},
  author = {Daniel Lüdecke},
  year = {2021},
  url = {https://CRAN.R-project.org/package=sjstats},
  doi = {10.5281/zenodo.1284472},
}

@Article{texreg2013,
  title = {{texreg}: Conversion of Statistical Model Output in {R} to {\LaTeX} and {HTML} Tables},
  author = {Philip Leifeld},
  journal = {Journal of Statistical Software},
  year = {2013},
  volume = {55},
  number = {8},
  pages = {1--24},
  url = {http://dx.doi.org/10.18637/jss.v055.i08},
}

@Article{tidyverse2019,
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  pages = {1686},
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}

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}