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Incorporate this in the consensus peaks process.
paper: https://doi.org/10.1126/science.aav1898
implementation in ASPEN: https://github.com/CCBR/ASPEN/blob/55f909d76500c3502c1c397ef3000908649b0284/workflow/scripts/narrowPeak_normalize_pvalues.R
The text was updated successfully, but these errors were encountered:
Option to use the statistical method above from Corces et al. or to use MSPC instead: https://genometric.github.io/MSPC/docs/cli/output
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implemented in nf-modules consensus_peaks subworkflow: https://github.com/CCBR/nf-modules/blob/0dd8b5ee89041f67a96c995211fb6646924e1452/subworkflows/CCBR/consensus_peaks/main.nf
Implemented as of 465b361 However, using normalization causes #160
kelly-sovacool
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Description of feature
Incorporate this in the consensus peaks process.
paper: https://doi.org/10.1126/science.aav1898
implementation in ASPEN: https://github.com/CCBR/ASPEN/blob/55f909d76500c3502c1c397ef3000908649b0284/workflow/scripts/narrowPeak_normalize_pvalues.R
The text was updated successfully, but these errors were encountered: