test.yml

on:
  pull_request:
    paths-ignore:
      - 'docs/**'
      - '**.md'
    types: [opened, edited]
  workflow_dispatch:

jobs:
  test_docker_build:
    runs-on: ubuntu-latest

    steps:
      - name: Free up space
        run: |
          sudo rm -rf /usr/share/dotnet
          sudo rm -rf /opt/ghc
          sudo rm -rf "/usr/local/share/boost"
          sudo rm -rf "$AGENT_TOOLSDIRECTORY"
          
      - name: Login to Docker Hub
        uses: docker/login-action@v1
        with:
          username: ${{ secrets.DOCKERHUB_USERNAME }}
          password: ${{ secrets.DOCKERHUB_PASSWORD }}

      - name: Get the sgn repo
        uses: actions/checkout@v2
  
      - name: Get branch name (merge)
        if: github.event_name != 'pull_request'
        shell: bash
        run: echo "branch=$(echo ${GITHUB_REF#refs/heads/})" >> $GITHUB_ENV

      - name: Get branch name (pull request)
        if: github.event_name == 'pull_request'
        shell: bash
        run: echo "branch=$(echo ${GITHUB_HEAD_REF})" >> $GITHUB_ENV

      - name: Get breedbase_dockerfile
        if: startsWith(env.branch, 'feature/') || startsWith(env.branch, 'bug/') || env.branch == 'develop'
        uses: actions/checkout@master
        with:
          repository: Breeding-Insight/breedbase_dockerfile
          path: breedbase_dockerfile
          ref: 'develop'
          submodules: 'recursive'

      - name: Get breedbase_dockerfile
        if: startsWith(env.branch, 'hotfix/') || env.branch == 'master'
        uses: actions/checkout@master
        with:
          repository: Breeding-Insight/breedbase_dockerfile
          path: breedbase_dockerfile
          ref: 'master'
          submodules: 'recursive'

      - name: Get the submodules
        working-directory: ./breedbase_dockerfile
        run: git submodule update --init --recursive
        
      - name: Set sgn origin
        working-directory: ./breedbase_dockerfile/cxgn/sgn
        run: |
          git remote rm origin
          git remote add origin git@github.com:Breeding-Insight/sgn.git
          git remote update

      - name: Checkout sgn branch
        working-directory: ./breedbase_dockerfile/cxgn/sgn
        run: |
          git checkout -B ${{ env.branch }} origin/${{ env.branch }}


      - name: Debug sgn branch
        working-directory: ./breedbase_dockerfile/cxgn/sgn
        run: git status

      - name: Set tag
        id: vars
        run: echo "imageName=$(echo breedinginsight/breedbase:test_build)" >> $GITHUB_ENV
        
      - name: Build Docker image
        working-directory: ./breedbase_dockerfile
        run: |
          docker build . --file Dockerfile --tag ${{env.imageName}}
          
  test_breedbase:
    if: false #disabled for now, as testing script is broken
    runs-on: ubuntu-latest
    container:
      image: breedbase/breedbase:latest
      env:
        HOME: /root
        MODE: 'TESTING'
        SYSTEM: 'GITACTION'
        PGPASSWORD: postgres
        SGN_TEST_SERVER: http://test_breedbase:3010
        SGN_REMOTE_SERVER_ADDR: selenium
      volumes:
        - ${{ github.workspace }}:/home/production/cxgn/sgn
        - ${{ github.workspace }}:/home/vagrant/cxgn/sgn
      options: --network-alias test_breedbase

    services:
      breedbase_db:
        image: postgres:12.9
        env:
          POSTGRES_PASSWORD: postgres
        # Set health checks to wait until postgres has started
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5

      selenium:
        image: selenium/standalone-firefox:3.141.59
        volumes:
          - ${{ github.workspace }}:/home/production/cxgn/sgn
          - ${{ github.workspace }}:/home/vagrant/cxgn/sgn
        options: --health-cmd="curl --silent --head http://localhost:4444 || exit 1"

    steps:
      - name: Checkout sgn
        uses: actions/checkout@v2
    
      - name: Run unit tests
        run: prove --recurse t/unit 2>/dev/null
      
      - name: Load/dump fixture database and build node modules
        run: |
          echo "--version" > ~/.proverc
          perl t/test_fixture.pl --dumpupdatedfixture
          rm ~/.proverc
        # work around run_all_patches.pl "what the heck - no TTY??" error
        # https://github.com/actions/runner/issues/241#issuecomment-842566950
        shell: 'script --flush --quiet --return --command "bash --noprofile --norc -eo pipefail {0}"'

      - name: Run unit_fixture tests
        # need entrypoint.sh to start slurm
        # --nopatch to skip running fixture and db patches (already done in previous step)
        run: /entrypoint.sh --nopatch t/unit_fixture 2>/dev/null

      - name: Run unit_mech tests
        run: /entrypoint.sh --nopatch t/unit_mech

      # selenium tests for a moment as separate folders - will change once full solgs are ready 
      # but anyway, it will is still fully functional for tests purpose
      - name: Run selenium tests 01_list
        run: /entrypoint.sh --nopatch t/selenium2/01_list 2>/dev/null

      - name: Run selenium tests 02_trial
        run: /entrypoint.sh --nopatch t/selenium2/02_trial 2>/dev/null

      - name: Run selenium tests dataset
        run: /entrypoint.sh --nopatch t/selenium2/03_dataset 2>/dev/null

      - name: Run selenium tests breeders
        run: /entrypoint.sh --nopatch t/selenium2/breeders 2>/dev/null

      - name: Run selenium tests onto
        run: /entrypoint.sh --nopatch t/selenium2/onto 2>/dev/null

      - name: Run selenium tests search
        run: /entrypoint.sh --nopatch t/selenium2/search 2>/dev/null

      - name: Run selenium tests stock
        run: /entrypoint.sh --nopatch t/selenium2/stock 2>/dev/null

      - name: Run selenium tests tools
        run: /entrypoint.sh --nopatch t/selenium2/tools 2>/dev/null