From 2de0524c693bc7df343fd6382ea5eda9b8ec45e9 Mon Sep 17 00:00:00 2001
From: HMS17 <84345306+HMS17@users.noreply.github.com>
Date: Thu, 16 Sep 2021 17:25:37 -0400
Subject: [PATCH 1/3] [BI-994] Ontology UI - Review Existing Terms

---
 src/components/layouts/UserSideBarLayout.vue |  8 ++--
 src/components/trait/TraitListsTable.vue     | 43 +++++++++++++++-----
 src/views/trait/TraitsList.vue               |  2 +-
 3 files changed, 37 insertions(+), 16 deletions(-)

diff --git a/src/components/layouts/UserSideBarLayout.vue b/src/components/layouts/UserSideBarLayout.vue
index a6e35a3f9..371fccc09 100644
--- a/src/components/layouts/UserSideBarLayout.vue
+++ b/src/components/layouts/UserSideBarLayout.vue
@@ -181,7 +181,7 @@
                 v-bind:class="{ 'is-active': traitsActive }"
                 :id="traitsMenuId"
               >
-                Traits
+                Ontology
                 <MoreVerticalIcon
                   v-if="!traitsActive"
                   class="is-pulled-right"
@@ -194,7 +194,7 @@
               <ul v-show="traitsActive">
                 <li>
                   <router-link v-bind:to="{name: 'traits-list', params: {programId: activeProgram.id}}">
-                    Trait List
+                    Ontology List
                   </router-link>
                 </li>
                 <li>
@@ -206,12 +206,12 @@
                   v-if="$ability.can('create', 'Trait')"
                 >
                   <router-link v-bind:to="{name: 'traits-import', params: {programId: activeProgram.id}}">
-                    Import Traits
+                    Import Ontology
                   </router-link>
                 </li>
                 <li>
                   <router-link v-bind:to="{name: 'traits-archived', params: {programId: activeProgram.id}}">
-                    Archived Traits
+                    Archived Ontology
                   </router-link>
                 </li>
               </ul>
diff --git a/src/components/trait/TraitListsTable.vue b/src/components/trait/TraitListsTable.vue
index d9da1f4d6..e65c09ab8 100644
--- a/src/components/trait/TraitListsTable.vue
+++ b/src/components/trait/TraitListsTable.vue
@@ -45,7 +45,7 @@
       </div>              
     </WarningModal>
 
-    <div class="columns has-text-right mb-0">
+    <div class="columns has-text-right mb-0 buttons">
       <div class="column">
         <button
             v-if="$ability.can('create', 'Trait')"
@@ -61,7 +61,23 @@
           />
         </span>
           <span>
-          New Trait
+          New Term
+        </span>
+        </button>
+        <button
+            v-if="$ability.can('create', 'Trait')"
+            v-show="!newTraitActive & traits.length > 0"
+            class="button is-primary has-text-weight-bold"
+            v-on:click="$router.push({name: 'traits-import', params: {programId: activeProgram.id}})"
+        >
+        <span class="icon is-small">
+          <PlusCircleIcon
+              size="1.5x"
+              aria-hidden="true"
+          />
+        </span>
+        <span>
+          Import Batch File
         </span>
         </button>
       </div>
@@ -116,17 +132,22 @@
               v-if="!data.active && data.active !== undefined">
             Archived
           </b-button>
-          {{ data.traitName }}
+          {{ data.observationVariableName }}
         </TableColumn>
-        <TableColumn name="level" v-bind:label="'Level'" v-bind:visible="!traitSidePanelState.collapseColumns">
-          {{ data.programObservationLevel.name }}
+        <TableColumn name="trait" v-bind:label="'Trait'" v-bind:visible="!collapseColumns">
+          {{ StringFormatters.toStartCase(data.traitDescription) }}
         </TableColumn>
         <TableColumn name="method" v-bind:label="'Method'" v-bind:visible="!traitSidePanelState.collapseColumns">
-          {{ StringFormatters.toStartCase(data.method.methodClass) }}
+          {{ data.method.description + " " + StringFormatters.toStartCase(data.method.methodClass) }}
         </TableColumn>
-        <TableColumn name="scale" v-bind:label="'Scale'" v-bind:visible="!traitSidePanelState.collapseColumns">
+        <TableColumn name="scaleClass" v-bind:label="'Scale Class'" v-bind:visible="!traitSidePanelState.collapseColumns">
           {{ TraitStringFormatters.getScaleTypeString(data.scale) }}
-        </TableColumn>        
+        </TableColumn>
+        <TableColumn name="unit" v-bind:label="'Unit'" v-bind:visible="!traitSidePanelState.collapseColumns">
+          <template v-if="data.scale.dataType==='NUMERICAL'">
+            {{ data.scale.scaleName }}
+          </template>
+        </TableColumn>
       </template>
 
       <!-- 
@@ -158,15 +179,15 @@
       <template v-slot:emptyMessage>
         <EmptyTableMessage
             v-bind:button-view-toggle="!newTraitActive"
-            v-bind:button-text="'New Trait'"
+            v-bind:button-text="'New Term'"
             v-on:newClick="activateNewTraitForm"
             v-bind:create-enabled="$ability.can('create', 'Trait')"
         >
           <p class="has-text-weight-bold">
-            No traits are currently defined for this program.
+            No ontology terms are currently defined for this program.
           </p>
           <p v-if="$ability.can('create', 'Trait')">
-            Create new traits by clicking "New Trait" or navigating to "Import Traits".
+            Create new ontology terms by clicking "New Term" or navigating to "Import Ontology".
           </p>
         </EmptyTableMessage>
       </template>
diff --git a/src/views/trait/TraitsList.vue b/src/views/trait/TraitsList.vue
index e845ef85f..db730457b 100644
--- a/src/views/trait/TraitsList.vue
+++ b/src/views/trait/TraitsList.vue
@@ -17,7 +17,7 @@
 
 <template>
   <div class="traits-list">
-    <h1 class="title">All Traits</h1>
+    <h1 class="title">Ontology</h1>
     <TraitListsTable
     v-on:show-success-notification="$emit('show-success-notification', $event)"
     v-on:show-error-notification="$emit('show-error-notification', $event)"

From 3dd84afc22fb7e21c40f05adda563ff4c64c48c5 Mon Sep 17 00:00:00 2001
From: HMS17 <84345306+HMS17@users.noreply.github.com>
Date: Fri, 17 Sep 2021 13:38:58 -0400
Subject: [PATCH 2/3] [BI-994] fixed menu id

---
 src/components/layouts/UserSideBarLayout.vue | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/components/layouts/UserSideBarLayout.vue b/src/components/layouts/UserSideBarLayout.vue
index 371fccc09..63391f194 100644
--- a/src/components/layouts/UserSideBarLayout.vue
+++ b/src/components/layouts/UserSideBarLayout.vue
@@ -179,7 +179,7 @@
               <router-link
                 v-bind:to="{name: 'traits', params: {programId: activeProgram.id}}"
                 v-bind:class="{ 'is-active': traitsActive }"
-                :id="traitsMenuId"
+                :id="ontologyMenuId"
               >
                 Ontology
                 <MoreVerticalIcon
@@ -307,7 +307,7 @@
 
     private homeMenuId: string = "usersidebarlayout-home-menu";
     private importFileMenuId: string = "usersidebarlayout-import-file-menu";
-    private traitsMenuId: string = "usersidebarlayout-traits-menu";
+    private ontologyMenuId: string = "usersidebarlayout-ontology-menu";
     private programManagementMenuId: string = "usersidebarlayout-program-management-menu";
     private brAPIMenuId: string = "usersidebarlayout-brapi-menu";
 

From add6303ed4201168da3033c7ac1adc8a38b4063e Mon Sep 17 00:00:00 2001
From: rob-ouser-bi <bidevteam@cornell.edu>
Date: Fri, 17 Sep 2021 18:48:17 +0000
Subject: [PATCH 3/3] [autocommit] bumping build number

---
 package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/package.json b/package.json
index 6dec766df..01def4181 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bi-web",
-  "version": "v0.4.0+154",
+  "version": "v0.4.0+156",
   "private": true,
   "scripts": {
     "build": "node $npm_package_config_task_path/build.js --dev-audit-level=critical --prod-audit-level=none",
@@ -85,5 +85,5 @@
     "vue-cli-plugin-axios": "0.0.4",
     "vue-template-compiler": "^2.6.10"
   },
-  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/c844a2adadf300738dde3ee777a648613416e1c2"
+  "versionInfo": "https://github.com/Breeding-Insight/bi-web/commit/ada688a7b8cbc12ed5075e1cdd6439175ae32f11"
 }