From 5fdbcdaf26abe9b74e65faabea81294acfdb14d1 Mon Sep 17 00:00:00 2001 From: Adrien Berchet Date: Mon, 11 Nov 2024 15:15:01 +0100 Subject: [PATCH] Release: 1.2.0 (#3) --- .auto-changelog | 3 +- CHANGELOG.md | 501 +++++++++++++++++++++++++++--------------------- 2 files changed, 284 insertions(+), 220 deletions(-) diff --git a/.auto-changelog b/.auto-changelog index f09eede..a52078b 100644 --- a/.auto-changelog +++ b/.auto-changelog @@ -7,5 +7,6 @@ "commitUrl": "https://github.com/BlueBrain/synthesis-workflow/commit/{id}", "issueUrl": "https://github.com/BlueBrain/synthesis-workflow/issues/{id}", "mergeUrl": "https://github.com/BlueBrain/synthesis-workflow/pull/{id}", - "compareUrl": "https://github.com/BlueBrain/synthesis-workflow/compare/{from}..{to}" + "compareUrl": "https://github.com/BlueBrain/synthesis-workflow/compare/{from}..{to}", + "startingVersion": "1.1.0" } diff --git a/CHANGELOG.md b/CHANGELOG.md index fc93c40..c09eb3a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,301 +1,364 @@ # Changelog -## [synthesis-workflow-v1.1.0](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v1.0.2...synthesis-workflow-v1.1.0) +## [1.2.0](https://github.com/BlueBrain/synthesis-workflow/compare/1.1.0..1.2.0) -> 3 November 2023 +> 11 November 2024 + +### Fixes + +- Fix OS (Alexis Arnaudon - [#1](https://github.com/BlueBrain/synthesis-workflow/pull/1)) + +### CI Improvements + +- (dependabot) Bump mikepenz/action-junit-report from 4 to 5 (Alexis Arnaudon - [#2](https://github.com/BlueBrain/synthesis-workflow/pull/2)) ### Build -- (deps) Relax NeuroTS and region-grower versions (Adrien Berchet - [a40edb4](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/a40edb4d05321925b7ca98f14f6f87d5bb5c9aca)) -- Bump region-grower (Adrien Berchet - [4c0914a](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/4c0914a41204540d027c6c6b71ddfc7bb9d78dbe)) -- Relax matplotlib version (Adrien Berchet - [113fc62](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/113fc62531c33f64fc6fe4bef934e489fcef3a54)) +- Bump NeuroTS and fix tests accordingly (Adrien Berchet - [93da345](https://github.com/BlueBrain/synthesis-workflow/commit/93da34559a7d8aee67d5f9c75f877c675f5639ce)) +- Bump neurocollage (Adrien Berchet - [49daf8f](https://github.com/BlueBrain/synthesis-workflow/commit/49daf8f6c2b4a865ce23b1be724f173b7a24370f)) +- Bump region-grower (Adrien Berchet - [a2d1690](https://github.com/BlueBrain/synthesis-workflow/commit/a2d1690afb02492f901208005c152197a13f788a)) +- Drop support for Python 3.8 (Adrien Berchet - [c23be04](https://github.com/BlueBrain/synthesis-workflow/commit/c23be0472ddc9672b8da706a91af481e3f31e4a7)) +- Bump Brainbuilder and NeuroCollage (Adrien Berchet - [a52e8da](https://github.com/BlueBrain/synthesis-workflow/commit/a52e8da0fe55b6685f046af8167ffc788926b07e)) +- Freeze docutils version to be compatible with m2r2 (Adrien Berchet - [2c3f737](https://github.com/BlueBrain/synthesis-workflow/commit/2c3f737dcd65d76b89ba6e9a0fd067e42afe635c)) + +### Fixes + +- Rework plot Violin features for Pandas>=2.2 (Adrien Berchet - [602c862](https://github.com/BlueBrain/synthesis-workflow/commit/602c8627cac405c02c10ee271830e384b087a7de)) + +### Chores And Housekeeping + +- Fix lint (Adrien Berchet - [2c22e09](https://github.com/BlueBrain/synthesis-workflow/commit/2c22e097adcaea5192a750333ef67ed50b8293d3)) +- Bump dir-content-diff (Adrien Berchet - [f62d9bb](https://github.com/BlueBrain/synthesis-workflow/commit/f62d9bb7677b5dfc00894feb3e53ebc6796a567d)) +- Update PyLint config (Adrien Berchet - [8b0991a](https://github.com/BlueBrain/synthesis-workflow/commit/8b0991afa5ac92e128d118951d9357bd4944f487)) + +### Changes to Test Assests + +- Bump NeuroTS and update the tests (Adrien Berchet - [ccf8708](https://github.com/BlueBrain/synthesis-workflow/commit/ccf87086903df681a601c1d074df450d5c158878)) + +### General Changes + +- OS (arnaudon - [fd4ae3e](https://github.com/BlueBrain/synthesis-workflow/commit/fd4ae3ef3546c8537e3ca5378c5f09105aebaa48)) +- Update README.rst (Alexis Arnaudon - [447f47e](https://github.com/BlueBrain/synthesis-workflow/commit/447f47ef9e5f3e9036319efc83d2d3562017435a)) +- Update README.rst (Alexis Arnaudon - [d069c8d](https://github.com/BlueBrain/synthesis-workflow/commit/d069c8dd2899fb07797e82b81ec6817c5362ac27)) + +## [1.1.0](https://github.com/BlueBrain/synthesis-workflow/compare/1.0.2..1.1.0) + +> 8 November 2024 + +### Build + +- (deps) Relax NeuroTS and region-grower versions (Adrien Berchet - [a40edb4](https://github.com/BlueBrain/synthesis-workflow/commit/a40edb4d05321925b7ca98f14f6f87d5bb5c9aca)) +- Bump region-grower (Adrien Berchet - [4c0914a](https://github.com/BlueBrain/synthesis-workflow/commit/4c0914a41204540d027c6c6b71ddfc7bb9d78dbe)) +- Relax matplotlib version (Adrien Berchet - [113fc62](https://github.com/BlueBrain/synthesis-workflow/commit/113fc62531c33f64fc6fe4bef934e489fcef3a54)) ### New Features -- Add boundary thickness mask (Alexis Arnaudon - [967cdcb](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/967cdcb0ff628cacb556a466af5753002b1bb0b1)) -- Extent scaling for basals (Alexis Arnaudon - [e1def8a](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/e1def8a057721cf350715353743786ad39e1c153)) -- Use default diametrizer (Alexis Arnaudon - [a854099](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/a8540997c8e74dd089bb49632a4a8f08b9d0d699)) +- Add boundary thickness mask (Alexis Arnaudon - [967cdcb](https://github.com/BlueBrain/synthesis-workflow/commit/967cdcb0ff628cacb556a466af5753002b1bb0b1)) +- Extent scaling for basals (Alexis Arnaudon - [e1def8a](https://github.com/BlueBrain/synthesis-workflow/commit/e1def8a057721cf350715353743786ad39e1c153)) +- Use default diametrizer (Alexis Arnaudon - [a854099](https://github.com/BlueBrain/synthesis-workflow/commit/a8540997c8e74dd089bb49632a4a8f08b9d0d699)) ### Fixes -- Use cell_composition for nrrd density filenames (Alexis Arnaudon - [33fac21](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/33fac21eeeb270c4a4cbe14542f88cd15ad5d603)) +- Use cell_composition for nrrd density filenames (Alexis Arnaudon - [33fac21](https://github.com/BlueBrain/synthesis-workflow/commit/33fac21eeeb270c4a4cbe14542f88cd15ad5d603)) -## [synthesis-workflow-v1.0.2](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v1.0.1...synthesis-workflow-v1.0.2) + -> 12 September 2023 +## [1.0.2](https://github.com/BlueBrain/synthesis-workflow/compare/1.0.1..1.0.2) + +> 8 November 2024 ### Build -- (deps) Constrain NeuroTS and region-grower versions (Adrien Berchet - [31e9f97](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/31e9f976789dfe4c3f0443fcc8d779079839f08f)) +- (deps) Constrain NeuroTS and region-grower versions (Adrien Berchet - [31e9f97](https://github.com/BlueBrain/synthesis-workflow/commit/31e9f976789dfe4c3f0443fcc8d779079839f08f)) ### New Features -- Add -dgdpi for workflow diagram and --version and fix logger (Adrien Berchet - [b96264c](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/b96264cc55a134c862c7d0c60f011b5aca3f890c)) +- Add -dgdpi for workflow diagram and --version and fix logger (Adrien Berchet - [b96264c](https://github.com/BlueBrain/synthesis-workflow/commit/b96264cc55a134c862c7d0c60f011b5aca3f890c)) ### Fixes -- Raise an exception when the morphologies extracted from the NeuronDB file can not be found (Adrien Berchet - [570c0eb](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/570c0eb4be4a4898634e98f502b270f7d4cedd56)) +- Raise an exception when the morphologies extracted from the NeuronDB file can not be found (Adrien Berchet - [570c0eb](https://github.com/BlueBrain/synthesis-workflow/commit/570c0eb4be4a4898634e98f502b270f7d4cedd56)) ### Chores And Housekeeping -- Apply Copier template (Adrien Berchet - [3c493f5](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/3c493f5e9935cad9f44487df9ada83f64c8d3b18)) +- Apply Copier template (Adrien Berchet - [3c493f5](https://github.com/BlueBrain/synthesis-workflow/commit/3c493f5e9935cad9f44487df9ada83f64c8d3b18)) ### Documentation Changes -- Fix doc for optional parameters (Adrien Berchet - [2177b44](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/2177b44209ca3199ccb7a16a010b76ae4ba9ff1a)) +- Fix doc for optional parameters (Adrien Berchet - [2177b44](https://github.com/BlueBrain/synthesis-workflow/commit/2177b44209ca3199ccb7a16a010b76ae4ba9ff1a)) -## [synthesis-workflow-v1.0.1](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v1.0.0...synthesis-workflow-v1.0.1) +## [1.0.1](https://github.com/BlueBrain/synthesis-workflow/compare/1.0.0..1.0.1) -> 3 July 2023 +> 8 November 2024 ### New Features -- Update examples for tutorial (Alexis Arnaudon - [37f7dc0](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/37f7dc032cfdfac27159b52e2d5c7f37a5dfae01)) +- Update examples for tutorial (Alexis Arnaudon - [37f7dc0](https://github.com/BlueBrain/synthesis-workflow/commit/37f7dc032cfdfac27159b52e2d5c7f37a5dfae01)) -## [synthesis-workflow-v1.0.0](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.1.3...synthesis-workflow-v1.0.0) +## [1.0.0](https://github.com/BlueBrain/synthesis-workflow/compare/0.1.3..1.0.0) -> 15 May 2023 +> 8 November 2024 ### New Features -- Add region support (Alexis Arnaudon - [506be99](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/506be99164d017cd9a1060dcb443e2d6c910ae6f)) +- Add region support (Alexis Arnaudon - [506be99](https://github.com/BlueBrain/synthesis-workflow/commit/506be99164d017cd9a1060dcb443e2d6c910ae6f)) -## [synthesis-workflow-v0.1.3](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.1.2...synthesis-workflow-v0.1.3) +## [0.1.3](https://github.com/BlueBrain/synthesis-workflow/compare/0.1.2..0.1.3) -> 15 May 2023 +> 8 November 2024 ### Build -- Set max version for region-grower (Adrien Berchet - [b11e682](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/b11e682b2e672d9a2463899aa9baaa57bf987f71)) +- Set max version for region-grower (Adrien Berchet - [b11e682](https://github.com/BlueBrain/synthesis-workflow/commit/b11e682b2e672d9a2463899aa9baaa57bf987f71)) ### Fixes -- Axon fixing (Alexis Arnaudon - [fd5b184](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/fd5b18438de931dffa8cc98cb6c98bd4afda7891)) +- Axon fixing (Alexis Arnaudon - [fd5b184](https://github.com/BlueBrain/synthesis-workflow/commit/fd5b18438de931dffa8cc98cb6c98bd4afda7891)) ### General Changes -- Fix circuit place seed (Alexis Arnaudon - [be61217](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/be61217cb90b533c4103ac197afa941607a2412d)) +- Fix circuit place seed (Alexis Arnaudon - [be61217](https://github.com/BlueBrain/synthesis-workflow/commit/be61217cb90b533c4103ac197afa941607a2412d)) -## [synthesis-workflow-v0.1.2](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.1.1...synthesis-workflow-v0.1.2) +## [0.1.2](https://github.com/BlueBrain/synthesis-workflow/compare/0.1.1..0.1.2) -> 14 March 2023 +> 8 November 2024 ### New Features -- Use 3d_angles and simpler diametrizer by default (Alexis Arnaudon - [14d6a2d](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/14d6a2d1b5c9e870d98abf52c68bda7ff30575ed)) +- Use 3d_angles and simpler diametrizer by default (Alexis Arnaudon - [14d6a2d](https://github.com/BlueBrain/synthesis-workflow/commit/14d6a2d1b5c9e870d98abf52c68bda7ff30575ed)) ### Chores And Housekeeping -- Fix for numpy>=1.24 and use more optional parameters (Adrien Berchet - [3b53020](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/3b53020463bb63feb5a47a5e1ed1cdcdd79743b6)) -- Update from copier template (Adrien Berchet - [50873ab](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/50873abcf36803458dbca0401d561c0c868e7479)) -- Bump brainbuilder (Adrien Berchet - [9c3849f](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/9c3849fd4db83d8df89a3d4a363dadab87b47c72)) -- Fix lint (Adrien Berchet - [f19a3a3](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/f19a3a3d1de47432605837358df4a07523663b25)) -- Apply Copier template (Adrien Berchet - [d6dcc09](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/d6dcc09226a581c7b5835a812d7c08ef19a2c59f)) -- Add JSON schemas to ListParameter objects (Adrien Berchet - [03a48db](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/03a48db30e02f95b9e0eb50b48146a2773767456)) -- Restrict brainbuilder to !=0.18.1 because of an issue with 56f304fe46a4d1c3ea14460eab735a20fc3ae056 (Adrien Berchet - [1433620](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/143362021ae07240d19ebabcfd72dc48183c9a07)) +- Fix for numpy>=1.24 and use more optional parameters (Adrien Berchet - [3b53020](https://github.com/BlueBrain/synthesis-workflow/commit/3b53020463bb63feb5a47a5e1ed1cdcdd79743b6)) +- Update from copier template (Adrien Berchet - [50873ab](https://github.com/BlueBrain/synthesis-workflow/commit/50873abcf36803458dbca0401d561c0c868e7479)) +- Bump brainbuilder (Adrien Berchet - [9c3849f](https://github.com/BlueBrain/synthesis-workflow/commit/9c3849fd4db83d8df89a3d4a363dadab87b47c72)) +- Fix lint (Adrien Berchet - [f19a3a3](https://github.com/BlueBrain/synthesis-workflow/commit/f19a3a3d1de47432605837358df4a07523663b25)) +- Apply Copier template (Adrien Berchet - [d6dcc09](https://github.com/BlueBrain/synthesis-workflow/commit/d6dcc09226a581c7b5835a812d7c08ef19a2c59f)) +- Add JSON schemas to ListParameter objects (Adrien Berchet - [03a48db](https://github.com/BlueBrain/synthesis-workflow/commit/03a48db30e02f95b9e0eb50b48146a2773767456)) +- Restrict brainbuilder to !=0.18.1 because of an issue with 56f304fe46a4d1c3ea14460eab735a20fc3ae056 (Adrien Berchet - [1433620](https://github.com/BlueBrain/synthesis-workflow/commit/143362021ae07240d19ebabcfd72dc48183c9a07)) ### Documentation Changes -- Fix indent in lists (Adrien Berchet - [9815ee8](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/9815ee8068bae75afc6af22bfe1b1af92894500a)) +- Fix indent in lists (Adrien Berchet - [9815ee8](https://github.com/BlueBrain/synthesis-workflow/commit/9815ee8068bae75afc6af22bfe1b1af92894500a)) ### Refactoring and Updates -- Apply Copier template (Adrien Berchet - [61ee764](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/61ee7645f924218eb5a5ffb7592f951cacece8b5)) -- Update from template (Adrien Berchet - [1cc8e4d](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/1cc8e4d64c275873206818a70d6d9e0b6852b14a)) +- Apply Copier template (Adrien Berchet - [61ee764](https://github.com/BlueBrain/synthesis-workflow/commit/61ee7645f924218eb5a5ffb7592f951cacece8b5)) +- Update from template (Adrien Berchet - [1cc8e4d](https://github.com/BlueBrain/synthesis-workflow/commit/1cc8e4d64c275873206818a70d6d9e0b6852b14a)) ### CI Improvements -- Bump pre-commit hooks and fix isort installation failure (Adrien Berchet - [c9996c2](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/c9996c2902211963cddb02998bfff691dcf70f36)) -- Fix coverage for pytest-cov>=4 (Adrien Berchet - [cf305d3](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/cf305d3124da0d756a44503d038eb4a5885e5147)) -- Fix tests for new versions of Pandas and Sphinx (Adrien Berchet - [ecd8dba](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/ecd8dbad84484832cf325d5960bfa9f7463804cf)) +- Bump pre-commit hooks and fix isort installation failure (Adrien Berchet - [c9996c2](https://github.com/BlueBrain/synthesis-workflow/commit/c9996c2902211963cddb02998bfff691dcf70f36)) +- Fix coverage for pytest-cov>=4 (Adrien Berchet - [cf305d3](https://github.com/BlueBrain/synthesis-workflow/commit/cf305d3124da0d756a44503d038eb4a5885e5147)) +- Fix tests for new versions of Pandas and Sphinx (Adrien Berchet - [ecd8dba](https://github.com/BlueBrain/synthesis-workflow/commit/ecd8dbad84484832cf325d5960bfa9f7463804cf)) ### General Changes -- Use external file for custom parameters (Alexis Arnaudon - [4bcebcc](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/4bcebcc63cf90f952b26894bb1a3425035a80130)) -- Use NeuroCollage (Alexis Arnaudon - [5799ac7](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/5799ac7a8453dcff836cf53baf2064063b7f8e1b)) -- Use latest diameter-synthesis (Alexis Arnaudon - [d0eaafd](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/d0eaafda25b4a2fe7be8b7fbe3b1ff0e1a23daff)) -- Export circuitconfig (Alexis Arnaudon - [44db085](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/44db085867fc6b46b7694f9e30b52bcca10bfcb9)) -- Fix substitution rule (Alexis Arnaudon - [5488996](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/548899663b26c989c53ebad5e18ab2662933a763)) +- Use external file for custom parameters (Alexis Arnaudon - [4bcebcc](https://github.com/BlueBrain/synthesis-workflow/commit/4bcebcc63cf90f952b26894bb1a3425035a80130)) +- Use NeuroCollage (Alexis Arnaudon - [5799ac7](https://github.com/BlueBrain/synthesis-workflow/commit/5799ac7a8453dcff836cf53baf2064063b7f8e1b)) +- Use latest diameter-synthesis (Alexis Arnaudon - [d0eaafd](https://github.com/BlueBrain/synthesis-workflow/commit/d0eaafda25b4a2fe7be8b7fbe3b1ff0e1a23daff)) +- Export circuitconfig (Alexis Arnaudon - [44db085](https://github.com/BlueBrain/synthesis-workflow/commit/44db085867fc6b46b7694f9e30b52bcca10bfcb9)) +- Fix substitution rule (Alexis Arnaudon - [5488996](https://github.com/BlueBrain/synthesis-workflow/commit/548899663b26c989c53ebad5e18ab2662933a763)) -## [synthesis-workflow-v0.1.1](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.1.0...synthesis-workflow-v0.1.1) +## [0.1.1](https://github.com/BlueBrain/synthesis-workflow/compare/0.1.0..0.1.1) -> 5 July 2022 +> 8 November 2024 ### General Changes -- Any region handling (v2) (Alexis Arnaudon - [3fd475a](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/3fd475a6f7711b21d04e989959cf6bd05528b4fa)) -- Trunk validation (Alexis Arnaudon - [b0b407e](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/b0b407e2ead89803053ccdf264d9993c145f8125)) -- Bump luigi-tools (Adrien Berchet - [9a19543](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/9a1954344f41ff5bc31d444b16d0fd4fecc62746)) -- Add commitlint on MR titles (Adrien Berchet - [0f1e9d4](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/0f1e9d448002c5348ceb00c7736994f332862e98)) -- Fix doc generation (Adrien Berchet - [daf066f](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/daf066f48ae4b7d4988bcf5652dbf981ca4afbfb)) -- Add multi-project trigger to ensure SynthDB is compatible with each new tag (Adrien Berchet - [15ec479](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/15ec4798e9f575b5946bdde6b86f78a41cd1fc9f)) -- Fix the multi-project trigger (Adrien Berchet - [95b95a3](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/95b95a35ee5c2d66029d44e7575310d6f45f894b)) +- Any region handling (v2) (Alexis Arnaudon - [3fd475a](https://github.com/BlueBrain/synthesis-workflow/commit/3fd475a6f7711b21d04e989959cf6bd05528b4fa)) +- Trunk validation (Alexis Arnaudon - [b0b407e](https://github.com/BlueBrain/synthesis-workflow/commit/b0b407e2ead89803053ccdf264d9993c145f8125)) +- Bump luigi-tools (Adrien Berchet - [9a19543](https://github.com/BlueBrain/synthesis-workflow/commit/9a1954344f41ff5bc31d444b16d0fd4fecc62746)) +- Add commitlint on MR titles (Adrien Berchet - [0f1e9d4](https://github.com/BlueBrain/synthesis-workflow/commit/0f1e9d448002c5348ceb00c7736994f332862e98)) +- Fix doc generation (Adrien Berchet - [daf066f](https://github.com/BlueBrain/synthesis-workflow/commit/daf066f48ae4b7d4988bcf5652dbf981ca4afbfb)) +- Add multi-project trigger to ensure SynthDB is compatible with each new tag (Adrien Berchet - [15ec479](https://github.com/BlueBrain/synthesis-workflow/commit/15ec4798e9f575b5946bdde6b86f78a41cd1fc9f)) +- Fix the multi-project trigger (Adrien Berchet - [95b95a3](https://github.com/BlueBrain/synthesis-workflow/commit/95b95a35ee5c2d66029d44e7575310d6f45f894b)) - +## [0.1.0](https://github.com/BlueBrain/synthesis-workflow/compare/0.0.11..0.1.0) -## [synthesis-workflow-v0.1.0](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.0.11...synthesis-workflow-v0.1.0) +> 8 November 2024 -> 1 April 2022 +### General Changes -- Insitu validation (collage + extents plots) (arnaudon - [d3e611d](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/d3e611d533ab4e00e00fddf73d40dc0af4aff037)) -- Use new versions of region-grower, TNS and diameter-synthesis (Adrien Berchet - [06257d7](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/06257d71e7084f71809b5e8b916a859457882aef)) -- Migrate from Gerrit to GitLab (Adrien Berchet - [e14ecc1](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/e14ecc113405f88cbf9bf31244b13f34c56afa88)) -- Remove global-exclude from MANIFEST (Adrien Berchet - [17bd12b](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/17bd12b2e866d3a0373bbbce4ccdaa3de1adb9b7)) -- Use pytest template to improve tests and coverage reports (Adrien Berchet - [742eeed](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/742eeedf8933df96cc668be5e19e3108b1095c59)) -- Update NeuroM dependency to 3.0.0 and update expected results (aleksei sanin - [2f8c447](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/2f8c447c2409c71570767fe4f1d62ab8dd70cf0e)) -- Pin dependency versions in tests (Adrien Berchet - [593d67b](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/593d67b3a64fb83735b471f23402b32eb0d04fc2)) -- Fix vacuum example and use luigi-tools>=0.0.15 (Alexis Arnaudon - [041efbe](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/041efbe2c2d1bf38abb9b328dd9d475165cff529)) -- Some minor fix (Alexis Arnaudon - [5d242a1](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/5d242a1368cd8de1af620f9b80a4efc706349d94)) -- Use Kubernetes runner (Adrien Berchet - [941d190](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/941d190532cbe336c0416de632d9489fadef66c2)) -- Drop support of py36 and py37 (Adrien Berchet - [62ed321](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/62ed32149f10e69df186a30671c51a2bd4a27f78)) -- Use Gitlab registry in CI and remove several warnings (Adrien Berchet - [ab8a526](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/ab8a526d542f159fe22cb60e5fd3b32eed27ddac)) -- cleanup vacuum example (Alexis Arnaudon - [6bacd19](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/6bacd190924cb9421d793ca529d21a6de6d0ee8e)) -- Bumped NeuroTS and diameter-synthesis versions (Adrien Berchet - [872f8ec](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/872f8ecece01cfe404816efb703a8534880ddc53)) -- Fix auto-release CI job (Adrien Berchet - [2e6eb0e](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/2e6eb0ee8ca9367c05944eeaf4940b496b7a5277)) +- Insitu validation (collage + extents plots) (arnaudon - [d3e611d](https://github.com/BlueBrain/synthesis-workflow/commit/d3e611d533ab4e00e00fddf73d40dc0af4aff037)) +- Use new versions of region-grower, TNS and diameter-synthesis (Adrien Berchet - [06257d7](https://github.com/BlueBrain/synthesis-workflow/commit/06257d71e7084f71809b5e8b916a859457882aef)) +- Use pytest template to improve tests and coverage reports (Adrien Berchet - [742eeed](https://github.com/BlueBrain/synthesis-workflow/commit/742eeedf8933df96cc668be5e19e3108b1095c59)) +- Bumped NeuroTS and diameter-synthesis versions (Adrien Berchet - [872f8ec](https://github.com/BlueBrain/synthesis-workflow/commit/872f8ecece01cfe404816efb703a8534880ddc53)) +- Migrate from Gerrit to GitLab (Adrien Berchet - [e14ecc1](https://github.com/BlueBrain/synthesis-workflow/commit/e14ecc113405f88cbf9bf31244b13f34c56afa88)) +- Fix vacuum example and use luigi-tools>=0.0.15 (Alexis Arnaudon - [041efbe](https://github.com/BlueBrain/synthesis-workflow/commit/041efbe2c2d1bf38abb9b328dd9d475165cff529)) +- cleanup vacuum example (Alexis Arnaudon - [6bacd19](https://github.com/BlueBrain/synthesis-workflow/commit/6bacd190924cb9421d793ca529d21a6de6d0ee8e)) +- Update NeuroM dependency to 3.0.0 and update expected results (aleksei sanin - [2f8c447](https://github.com/BlueBrain/synthesis-workflow/commit/2f8c447c2409c71570767fe4f1d62ab8dd70cf0e)) +- Use Gitlab registry in CI and remove several warnings (Adrien Berchet - [ab8a526](https://github.com/BlueBrain/synthesis-workflow/commit/ab8a526d542f159fe22cb60e5fd3b32eed27ddac)) +- Drop support of py36 and py37 (Adrien Berchet - [62ed321](https://github.com/BlueBrain/synthesis-workflow/commit/62ed32149f10e69df186a30671c51a2bd4a27f78)) +- Fix auto-release CI job (Adrien Berchet - [2e6eb0e](https://github.com/BlueBrain/synthesis-workflow/commit/2e6eb0ee8ca9367c05944eeaf4940b496b7a5277)) +- Use Kubernetes runner (Adrien Berchet - [941d190](https://github.com/BlueBrain/synthesis-workflow/commit/941d190532cbe336c0416de632d9489fadef66c2)) +- Some minor fix (Alexis Arnaudon - [5d242a1](https://github.com/BlueBrain/synthesis-workflow/commit/5d242a1368cd8de1af620f9b80a4efc706349d94)) +- Pin dependency versions in tests (Adrien Berchet - [593d67b](https://github.com/BlueBrain/synthesis-workflow/commit/593d67b3a64fb83735b471f23402b32eb0d04fc2)) +- Remove global-exclude from MANIFEST (Adrien Berchet - [17bd12b](https://github.com/BlueBrain/synthesis-workflow/commit/17bd12b2e866d3a0373bbbce4ccdaa3de1adb9b7)) + +## [0.0.11](https://github.com/BlueBrain/synthesis-workflow/compare/0.0.10..0.0.11) + +> 8 November 2024 -## [synthesis-workflow-v0.0.11](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.0.10...synthesis-workflow-v0.0.11) +### General Changes + +- Import morph-validator functions, fix the tests and fix dependencies (Adrien Berchet - [c8d3fee](https://github.com/BlueBrain/synthesis-workflow/commit/c8d3fee829ef1ca10f9be45fbfa9d556cfb105d5)) +- Make choose_morphologies export scores (Adrien Berchet - [608b92f](https://github.com/BlueBrain/synthesis-workflow/commit/608b92f152fb94364a18758aaae3793134f661a7)) +- Use dir-diff-content, update to py38 and bump dependencies. (Adrien Berchet - [a9be8db](https://github.com/BlueBrain/synthesis-workflow/commit/a9be8db524ed2800c5a3726f78bf2d6d9ef78898)) +- Black the code with line length of 100 (Adrien Berchet - [f269215](https://github.com/BlueBrain/synthesis-workflow/commit/f26921556cae9336da843117b1779c8e5942f387)) +- Pin versions before moving to region-grower >= 0.2 (Adrien Berchet - [a2529e1](https://github.com/BlueBrain/synthesis-workflow/commit/a2529e16d9764d86de9a1cb6618f4b8194714a13)) +- Fix Py38 (Adrien Berchet - [3b93726](https://github.com/BlueBrain/synthesis-workflow/commit/3b93726730961760069b4fbb3631a4208d849350)) +- density map tool (arnaudon - [8684580](https://github.com/BlueBrain/synthesis-workflow/commit/8684580ae52b2befda859daf2c1cdabba9cdd387)) +- Fix compatibility with Py38 (Adrien Berchet - [cd07dec](https://github.com/BlueBrain/synthesis-workflow/commit/cd07dec2146dbdc73cb3e263b4f08ce5ed78f1a4)) +- Use workflow rendering functions that were transferred to luigi-tools (Adrien Berchet - [fd582e5](https://github.com/BlueBrain/synthesis-workflow/commit/fd582e532c316ac33b56cbbfbcee2020e863c797)) +- Use luigi-tools>=0.0.5 to automatically create parent directories of task targets (Adrien Berchet - [fa9beab](https://github.com/BlueBrain/synthesis-workflow/commit/fa9beabde3b4417ac6742eca38dc9380c359f779)) +- Create distributions for axon according to https://bbpcode.epfl.ch/code/\#/c/52107 (Adrien Berchet - [8fa1ecc](https://github.com/BlueBrain/synthesis-workflow/commit/8fa1ecc61d556578ef5e7e76ff8d9e114b922a55)) +- Update requirements (Adrien Berchet - [74a66b5](https://github.com/BlueBrain/synthesis-workflow/commit/74a66b501f1a3be579b881af29611625414cd863)) +- Use importlib in setup.py instead of imp (Adrien Berchet - [f6c43b3](https://github.com/BlueBrain/synthesis-workflow/commit/f6c43b3f8c4410f1ebd32af4d986538c89cbacfd)) +- Merge "density map tool" (Alexis Arnaudon - [16af2e3](https://github.com/BlueBrain/synthesis-workflow/commit/16af2e3b73a94fa347979ae9ad547cbae7d05193)) +- Update tox to for py36 only for linting (Adrien Berchet - [c44cb63](https://github.com/BlueBrain/synthesis-workflow/commit/c44cb636f1d4648ea26d90af1885efa4e3b084c8)) + +## [0.0.10](https://github.com/BlueBrain/synthesis-workflow/compare/0.0.9..0.0.10) + +> 8 November 2024 + +### General Changes + +- Use luigi-tools package (Adrien Berchet - [80d16ea](https://github.com/BlueBrain/synthesis-workflow/commit/80d16ea00ec8b6e3e8ec67baded9f7de3e314618)) +- Fix BuildAxonMorphologies to use worker from placement_algorithm (Adrien Berchet - [5cc05de](https://github.com/BlueBrain/synthesis-workflow/commit/5cc05de1c15bdded7fdd4d7eff5744fa383429d5)) +- Add methodology in the doc (Adrien Berchet - [63a8624](https://github.com/BlueBrain/synthesis-workflow/commit/63a862490886b945f22d51377afbcb25241853f5)) +- Update changelog (Adrien Berchet - [0a368c0](https://github.com/BlueBrain/synthesis-workflow/commit/0a368c06b2961e79289a6daf26486358328f09d5)) +- Use luigi-tools==0.0.3 (Adrien Berchet - [19b4a66](https://github.com/BlueBrain/synthesis-workflow/commit/19b4a66346b272d676bd0bfdc0c88459fe88b60e)) +- Fix PlotPathDistanceFits for mtypes with no fit (Adrien Berchet - [5341bae](https://github.com/BlueBrain/synthesis-workflow/commit/5341baed94f36d8cb3e3e4bfb30cfd44d313d322)) +- Improve doc: add link to TNS doc (Adrien Berchet - [e31dc56](https://github.com/BlueBrain/synthesis-workflow/commit/e31dc5677a995eec7b6e759d7099a2c3f453c80d)) + +## [0.0.9](https://github.com/BlueBrain/synthesis-workflow/compare/0.0.8..0.0.9) + +> 8 November 2024 + +### General Changes -> 25 May 2021 +- Add a task to create annotation.json file (Adrien Berchet - [d983444](https://github.com/BlueBrain/synthesis-workflow/commit/d9834447a9c94b23a424df9685d204e3f455a2ad)) +- Fix parallelization in vacuum synthesis (Adrien Berchet - [e2c68dc](https://github.com/BlueBrain/synthesis-workflow/commit/e2c68dc3819d95feb5c253089be56c37c21cb9f7)) +- Minor doc updates (Adrien Berchet - [1b2e5f1](https://github.com/BlueBrain/synthesis-workflow/commit/1b2e5f1a25c50a443a36cc58b4f2f67d7ef9d966)) +- Update morph-tool requirements (Adrien Berchet - [1d4d46e](https://github.com/BlueBrain/synthesis-workflow/commit/1d4d46e9d57620e9af87b7bd656944af4c86e6d5)) + +## [0.0.8](https://github.com/BlueBrain/synthesis-workflow/compare/0.0.7..0.0.8) + +> 8 November 2024 + +### General Changes + +- Simplify doc and improve its generation (Adrien Berchet - [c73827d](https://github.com/BlueBrain/synthesis-workflow/commit/c73827d3422fee6dd9365376547c24c1d8faa99e)) +- Add score matrix report (Adrien Berchet - [7d891ff](https://github.com/BlueBrain/synthesis-workflow/commit/7d891ff113e8ff23103c3828e8ca4d6489725bca)) +- Updates the way the neuronDB files are found. (arnaudon - [4a4269e](https://github.com/BlueBrain/synthesis-workflow/commit/4a4269e930ec26ad4aec8c25f46bcfc1338c35ff)) + +## [0.0.7](https://github.com/BlueBrain/synthesis-workflow/compare/0.0.6..0.0.7) + +> 8 November 2024 + +### General Changes + +- Improve doc (Adrien Berchet - [a887fe8](https://github.com/BlueBrain/synthesis-workflow/commit/a887fe8fe0bfac3a3feb9dc0e3291905665932be)) +- added creation of thickness mask for Isocortex (arnaudon - [1ab0730](https://github.com/BlueBrain/synthesis-workflow/commit/1ab0730050e11907c1c1f0ff51175b1e1e135da1)) +- Add examples of configuration files into the doc (Adrien Berchet - [6c6e94d](https://github.com/BlueBrain/synthesis-workflow/commit/6c6e94d1859dedd3a0e158e1063ab67448d5ba1e)) + +## [0.0.6](https://github.com/BlueBrain/synthesis-workflow/compare/0.0.5..0.0.6) + +> 8 November 2024 + +### General Changes + +- Improve doc and tests (Adrien Berchet - [017ba53](https://github.com/BlueBrain/synthesis-workflow/commit/017ba53f652f1f735dd345fa62f7e1bffc44d2ff)) + +## [0.0.5](https://github.com/BlueBrain/synthesis-workflow/compare/0.0.4..0.0.5) + +> 8 November 2024 + +### General Changes + +- Update changelog (Adrien Berchet - [8950c50](https://github.com/BlueBrain/synthesis-workflow/commit/8950c50be68a24ba159ac2197dd2807b7a6ac9e1)) + +## [0.0.4](https://github.com/BlueBrain/synthesis-workflow/compare/0.0.3..0.0.4) + +> 8 November 2024 + +### General Changes + +- Fix CLI for synthesis-workflow and MorphVal (Adrien Berchet - [a86eab5](https://github.com/BlueBrain/synthesis-workflow/commit/a86eab58f541a19f0c826701010ec9f4aa2ce4d0)) + +## [0.0.3](https://github.com/BlueBrain/synthesis-workflow/compare/0.0.1..0.0.3) + +> 8 November 2024 + +### General Changes + +- Improve doc generation (Adrien Berchet - [66005e6](https://github.com/BlueBrain/synthesis-workflow/commit/66005e64b48ce535223347797187849a74e3e700)) +- Fix requirements (Adrien Berchet - [7d1591d](https://github.com/BlueBrain/synthesis-workflow/commit/7d1591d28c8e4af72d072da2e9e1e9abd0fc94a4)) +- Remove inheritance diagram from doc (Adrien Berchet - [c4c951e](https://github.com/BlueBrain/synthesis-workflow/commit/c4c951e1f1e23e8f7a65b66d5e11e2036a7ec074)) + +## 0.0.1 + +> 8 November 2024 + +### General Changes -- Make choose_morphologies export scores (Adrien Berchet - [608b92f](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/608b92f152fb94364a18758aaae3793134f661a7)) -- Use luigi-tools>=0.0.5 to automatically create parent directories of task targets (Adrien Berchet - [fa9beab](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/fa9beabde3b4417ac6742eca38dc9380c359f779)) -- Create distributions for axon according to https://bbpcode.epfl.ch/code/\#/c/52107 (Adrien Berchet - [8fa1ecc](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/8fa1ecc61d556578ef5e7e76ff8d9e114b922a55)) -- Update requirements (Adrien Berchet - [74a66b5](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/74a66b501f1a3be579b881af29611625414cd863)) -- density map tool (arnaudon - [8684580](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/8684580ae52b2befda859daf2c1cdabba9cdd387)) -- Update tox to for py36 only for linting (Adrien Berchet - [c44cb63](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/c44cb636f1d4648ea26d90af1885efa4e3b084c8)) -- Black the code with line length of 100 (Adrien Berchet - [f269215](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/f26921556cae9336da843117b1779c8e5942f387)) -- Fix compatibility with Py38 (Adrien Berchet - [cd07dec](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/cd07dec2146dbdc73cb3e263b4f08ce5ed78f1a4)) -- Fix Py38 (Adrien Berchet - [3b93726](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/3b93726730961760069b4fbb3631a4208d849350)) -- Use workflow rendering functions that were transferred to luigi-tools (Adrien Berchet - [fd582e5](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/fd582e532c316ac33b56cbbfbcee2020e863c797)) -- Use dir-diff-content, update to py38 and bump dependencies. (Adrien Berchet - [a9be8db](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/a9be8db524ed2800c5a3726f78bf2d6d9ef78898)) -- Merge "density map tool" (Alexis Arnaudon - [16af2e3](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/16af2e3b73a94fa347979ae9ad547cbae7d05193)) -- Import morph-validator functions, fix the tests and fix dependencies (Adrien Berchet - [c8d3fee](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/c8d3fee829ef1ca10f9be45fbfa9d556cfb105d5)) -- Use importlib in setup.py instead of imp (Adrien Berchet - [f6c43b3](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/f6c43b3f8c4410f1ebd32af4d986538c89cbacfd)) -- Pin versions before moving to region-grower >= 0.2 (Adrien Berchet - [a2529e1](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/a2529e16d9764d86de9a1cb6618f4b8194714a13)) - -## [synthesis-workflow-v0.0.10](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.0.9...synthesis-workflow-v0.0.10) - -> 14 December 2020 - -- Update changelog (Adrien Berchet - [0a368c0](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/0a368c06b2961e79289a6daf26486358328f09d5)) -- Fix PlotPathDistanceFits for mtypes with no fit (Adrien Berchet - [5341bae](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/5341baed94f36d8cb3e3e4bfb30cfd44d313d322)) -- Fix BuildAxonMorphologies to use worker from placement_algorithm (Adrien Berchet - [5cc05de](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/5cc05de1c15bdded7fdd4d7eff5744fa383429d5)) -- Use luigi-tools package (Adrien Berchet - [80d16ea](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/80d16ea00ec8b6e3e8ec67baded9f7de3e314618)) -- Use luigi-tools==0.0.3 (Adrien Berchet - [19b4a66](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/19b4a66346b272d676bd0bfdc0c88459fe88b60e)) -- Add methodology in the doc (Adrien Berchet - [63a8624](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/63a862490886b945f22d51377afbcb25241853f5)) -- Improve doc: add link to TNS doc (Adrien Berchet - [e31dc56](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/e31dc5677a995eec7b6e759d7099a2c3f453c80d)) - -## [synthesis-workflow-v0.0.9](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.0.8...synthesis-workflow-v0.0.9) - -> 26 November 2020 - -- Update morph-tool requirements (Adrien Berchet - [1d4d46e](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/1d4d46e9d57620e9af87b7bd656944af4c86e6d5)) -- Add a task to create annotation.json file (Adrien Berchet - [d983444](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/d9834447a9c94b23a424df9685d204e3f455a2ad)) -- Fix parallelization in vacuum synthesis (Adrien Berchet - [e2c68dc](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/e2c68dc3819d95feb5c253089be56c37c21cb9f7)) -- Minor doc updates (Adrien Berchet - [1b2e5f1](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/1b2e5f1a25c50a443a36cc58b4f2f67d7ef9d966)) - -## [synthesis-workflow-v0.0.8](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.0.7...synthesis-workflow-v0.0.8) - -> 25 November 2020 - -- Updates the way the neuronDB files are found. (arnaudon - [4a4269e](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/4a4269e930ec26ad4aec8c25f46bcfc1338c35ff)) -- Add score matrix report (Adrien Berchet - [7d891ff](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/7d891ff113e8ff23103c3828e8ca4d6489725bca)) -- Simplify doc and improve its generation (Adrien Berchet - [c73827d](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/c73827d3422fee6dd9365376547c24c1d8faa99e)) - -## [synthesis-workflow-v0.0.7](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.0.6...synthesis-workflow-v0.0.7) - -> 18 November 2020 - -- added creation of thickness mask for Isocortex (arnaudon - [1ab0730](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/1ab0730050e11907c1c1f0ff51175b1e1e135da1)) -- Improve doc (Adrien Berchet - [a887fe8](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/a887fe8fe0bfac3a3feb9dc0e3291905665932be)) -- Add examples of configuration files into the doc (Adrien Berchet - [6c6e94d](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/6c6e94d1859dedd3a0e158e1063ab67448d5ba1e)) - -## [synthesis-workflow-v0.0.6](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.0.5...synthesis-workflow-v0.0.6) - -> 17 November 2020 - -- Improve doc and tests (Adrien Berchet - [017ba53](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/017ba53f652f1f735dd345fa62f7e1bffc44d2ff)) - -## [synthesis-workflow-v0.0.5](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.0.4...synthesis-workflow-v0.0.5) - -> 12 November 2020 - -- Update changelog (Adrien Berchet - [8950c50](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/8950c50be68a24ba159ac2197dd2807b7a6ac9e1)) - -## [synthesis-workflow-v0.0.4](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.0.3...synthesis-workflow-v0.0.4) - -> 12 November 2020 - -- Fix CLI for synthesis-workflow and MorphVal (Adrien Berchet - [a86eab5](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/a86eab58f541a19f0c826701010ec9f4aa2ce4d0)) - -## [synthesis-workflow-v0.0.3](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/compare/synthesis-workflow-v0.0.1...synthesis-workflow-v0.0.3) - -> 11 November 2020 - -- Improve doc generation (Adrien Berchet - [66005e6](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/66005e64b48ce535223347797187849a74e3e700)) -- Fix requirements (Adrien Berchet - [7d1591d](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/7d1591d28c8e4af72d072da2e9e1e9abd0fc94a4)) -- Remove inheritance diagram from doc (Adrien Berchet - [c4c951e](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/c4c951e1f1e23e8f7a65b66d5e11e2036a7ec074)) - -## synthesis-workflow-v0.0.1 - -> 11 November 2020 - -- Initial commit (Adrien Berchet - [480db73](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/480db7332e5885cafe31821868d7fb94eee42d08)) -- Fix logger and add logging of actual parameters after global variable processing (Adrien Berchet - [9984d60](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/9984d606d20692b94fba8d4632476361e9112614)) -- Cleaning warnings and add a new one when Parameters are set to None (Adrien Berchet - [eb893e8](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/eb893e83f896294667df0d728c57e724639dfe28)) -- Use luigi's hook to log parameter values (Adrien Berchet - [d82615a](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/d82615a6be3189fc618d95b5117938d04902df55)) -- Set requirements (Adrien Berchet - [ed8c2b3](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/ed8c2b33246bd286fa61df3fc8ca9b107787815e)) -- Use joblib everywhere instead of multiprocessing (Adrien Berchet - [cc6c792](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/cc6c792215f32ecc73d87bf08bbf3c856ab0ca0d)) -- Make plots more robust ; Fix collage tasks (Adrien Berchet - [a5fd59f](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/a5fd59f2d0a9fcb6423d2b7585756514a2853816)) -- Initial empty repository (Dries Verachtert - [99d6ae2](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/99d6ae28f66ba3ca70bb957cc4b02265420b01aa)) -- Setup pytest and update requirements (Adrien Berchet - [efe3ee1](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/efe3ee1f0036895564e78ed27ac16ed77412f69c)) -- Fix lint errors and add auto generation of version.py (Adrien Berchet - [1bb1a08](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/1bb1a08b1f70b147b2d5ebb7ed2bdc9fa55c99f2)) -- Reorganised the code ; Merged PlotMorphometrics and PlotVacuumMorphometrics tasks (Adrien Berchet - [d212244](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/d212244160c912d46e4d7366000fe97be4b83475)) -- Fix CI (Adrien Berchet - [1a8ac95](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/1a8ac951c383cb1cc6835db93d72fcf3788725f0)) -- small updates (arnaudon - [8156aaf](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/8156aafd5e8655fc9f5ad2b7b02c33a96855d154)) -- Fix axon choice and minor other cleanings (Adrien Berchet - [8af7b17](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/8af7b17e5fb23b9cb4adb808f2f2f1502e6486c5)) -- Fix axon_morphs_base_dir extraction (Adrien Berchet - [65b4574](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/65b4574b8dfb3522b58b07afb89c2af690f4225f)) -- Fix create_axon_morphologies_tsv() (Adrien Berchet - [7813ece](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/7813ece00700950be6fddcd48b76a443151bed05)) -- Hide some warnings (Adrien Berchet - [80b55a8](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/80b55a8945b9b2495f290b170ed2f09765e9df23)) -- collage update (arnaudon - [609fc39](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/609fc39ed4c4db84a86be085409ff2707292dc96)) -- Update apical rescaling (Adrien Berchet - [25733bd](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/25733bd09c0c6cbbfae829d16320d2112f520441)) -- Add CLI and rework logging (Adrien Berchet - [eaa27b9](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/eaa27b9a6430a6c1940ff8afeae9958f52889db1)) -- several things in that commit: (arnaudon - [2b5a492](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/2b5a4927a0c93145157fe227a857561836416b50)) -- Improve mechanism for global parameters (Adrien Berchet - [be274b3](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/be274b30a96c245130c85d764250a7063daccff7)) -- Fix logger for region-grower (Adrien Berchet - [a853dd5](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/a853dd56748530cf121b07241ee918a7c72038fe)) -- Improve luigi tools (Adrien Berchet - [e8eae3b](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/e8eae3b9ec7b23ceb199cf8b0cf76fca750b385c)) -- Add a test for luigi_tools.target_remove() (Adrien Berchet - [c6d1286](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/c6d12869fb5a0b0506a93d2f5fbd9bf867dc9961)) -- Transform all luigi.tasks into WorkflowTask and improve outputs (Adrien Berchet - [db706cc](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/db706cc932e7151ba38ddf051c12b8184c58b929)) -- Improve Synthesize dependency of PlotScale (Adrien Berchet - [10d930b](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/10d930b224e32d3287137b09b5563a3adb9e0c72)) -- Clean vacuum workflow (Adrien Berchet - [c7736c7](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/c7736c75778d13179303bb0449d006d498d0fba6)) -- Add task to checkout configuration from repository (Adrien Berchet - [b26d226](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/b26d226700864b26faf660800211378f94a0c878)) -- Add diametrizer in vacuum synthesis (Adrien Berchet - [123c36a](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/123c36a9812466dd9cc165ac9a29765def6f43d4)) -- Merge "Add task to checkout configuration from repository" (Adrien Berchet - [fcda863](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/fcda863439aaf3174c53d574d27dafd372298b6e)) -- Add task to build a circuit MV3 file (Adrien Berchet - [4c19f80](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/4c19f80be14a31008d7a54d2daf80dc2864a3afa)) -- Add task to build a morphs_df file (Adrien Berchet - [debf8a6](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/debf8a6e4f96d3fc820595999c429267a29f2fa7)) -- Add a new target class that add a prefix to its path (Adrien Berchet - [9be3c43](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/9be3c432b443c48ba55680b388739c92672e6536)) -- generalise git clone task (arnaudon - [d6dc669](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/d6dc6691ea5155c14ce1929ab3a4970a8a5b24ec)) -- Add test for OutputLocalTarget with absolute path and prefix (Adrien Berchet - [c18c368](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/c18c36895525ac2b8c30b7384b75f0e29fa964fe)) -- Merge "Add test for OutputLocalTarget with absolute path and prefix" (Adrien Berchet - [69ffe7e](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/69ffe7e4c4530cf92444bd407a1ed8c1c88c6f85)) -- Improve validation configuration (Adrien Berchet - [75c7aa6](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/75c7aa6d73ab88a11edf0cd7d7eadff401d12662)) -- Minor fixes (Adrien Berchet - [31dddcb](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/31dddcb58e56866653ea0f7c11d894bf6eb042b8)) -- fix bug in task shuffle and atlas get_layers (arnaudon - [f8060f6](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/f8060f68d4360551457b66ce559939f8237b25c4)) -- Improve doc (Adrien Berchet - [73e5794](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/73e5794e0f3dccdef7a6e410c69bc6322aaf294f)) -- Use specific targets to improve output directory tree (Adrien Berchet - [6ebdf5b](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/6ebdf5be08cc52435d614eb404345a8a39d64cdf)) -- Affine fit for path distance (arnaudon - [816e2ea](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/816e2ea066408d7d256e6c9565de5e9dd5ba7902)) -- Add tests for the workflows and reorganize the code (Adrien Berchet - [f1608c9](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/f1608c9711cad2e719042eea43c3ac80349b5461)) -- Make the PlotCollage task much faster (Adrien Berchet - [cf27173](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/cf27173078957c6afb000cc9ffba4d9f05f99aff)) -- Improve axon grafting (arnaudon - [f095bed](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/f095bed32a7d01c29b02283da9317e02e868ed73)) -- Merge "Make the PlotCollage task much faster" (Alexis Arnaudon - [95676a1](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/95676a17ce52b24b77a92d072b2a57b2d532bba3)) -- Improve parallel massively (arnaudon - [534cfdc](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/534cfdc055a2bc389c6566ed3c7dbe47169cd41a)) -- Add MorphVal library (Adrien Berchet - [3592568](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/3592568d8fbcbec2092129a1f0625532f710adea)) -- Merge "Improve parallel massively" (Alexis Arnaudon - [1a1b8fa](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/1a1b8fade68cbed928bafc0618f963d911ca0b86)) -- Improved a few things (arnaudon - [3103154](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/31031549d907f8cad82466215c6c7e9aff9898ee)) -- Fix morphval (Adrien Berchet - [bd722fe](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/bd722fef9591e44df162394c6db738f9def355cc)) -- Optimize circuit slicing (Adrien Berchet - [8f2d7f2](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/8f2d7f2c9b16e30688b643902fbf27ba4ff2eedd)) -- Use absolute imports (Adrien Berchet - [7fc1c4d](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/7fc1c4dd9311a4c76f6840126c91a31f3cb5b255)) -- A None value for mtypes means that all mtypes are taken (Adrien Berchet - [8c92176](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/8c92176968d75f52edf63119cb0842db02c398d3)) -- Improve plot_collage (Adrien Berchet - [673282f](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/673282f40dcd08bf94d57da7f9289ab29e7a2a90)) -- Use 2 processes for tests (Adrien Berchet - [c4ddf19](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/c4ddf199213c08862d0243b34ead38fdce69a429)) -- Optimize validation.get_layer_info() (Adrien Berchet - [e47176b](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/e47176b535bae5a07ca77307299c109bc881fcb4)) -- Optimize test distribution among processes and pylint (Adrien Berchet - [acd4962](https://bbpgitlab.epfl.ch/neuromath/synthesis-workflow/commit/acd4962a247cbca7dd639a5c961bc5322ccab277)) +- Add tests for the workflows and reorganize the code (Adrien Berchet - [f1608c9](https://github.com/BlueBrain/synthesis-workflow/commit/f1608c9711cad2e719042eea43c3ac80349b5461)) +- Initial commit (Adrien Berchet - [480db73](https://github.com/BlueBrain/synthesis-workflow/commit/480db7332e5885cafe31821868d7fb94eee42d08)) +- Add MorphVal library (Adrien Berchet - [3592568](https://github.com/BlueBrain/synthesis-workflow/commit/3592568d8fbcbec2092129a1f0625532f710adea)) +- several things in that commit: (arnaudon - [2b5a492](https://github.com/BlueBrain/synthesis-workflow/commit/2b5a4927a0c93145157fe227a857561836416b50)) +- Reorganised the code ; Merged PlotMorphometrics and PlotVacuumMorphometrics tasks (Adrien Berchet - [d212244](https://github.com/BlueBrain/synthesis-workflow/commit/d212244160c912d46e4d7366000fe97be4b83475)) +- Update apical rescaling (Adrien Berchet - [25733bd](https://github.com/BlueBrain/synthesis-workflow/commit/25733bd09c0c6cbbfae829d16320d2112f520441)) +- Fix morphval (Adrien Berchet - [bd722fe](https://github.com/BlueBrain/synthesis-workflow/commit/bd722fef9591e44df162394c6db738f9def355cc)) +- collage update (arnaudon - [609fc39](https://github.com/BlueBrain/synthesis-workflow/commit/609fc39ed4c4db84a86be085409ff2707292dc96)) +- Improve mechanism for global parameters (Adrien Berchet - [be274b3](https://github.com/BlueBrain/synthesis-workflow/commit/be274b30a96c245130c85d764250a7063daccff7)) +- Fix axon choice and minor other cleanings (Adrien Berchet - [8af7b17](https://github.com/BlueBrain/synthesis-workflow/commit/8af7b17e5fb23b9cb4adb808f2f2f1502e6486c5)) +- Improve luigi tools (Adrien Berchet - [e8eae3b](https://github.com/BlueBrain/synthesis-workflow/commit/e8eae3b9ec7b23ceb199cf8b0cf76fca750b385c)) +- generalise git clone task (arnaudon - [d6dc669](https://github.com/BlueBrain/synthesis-workflow/commit/d6dc6691ea5155c14ce1929ab3a4970a8a5b24ec)) +- Fix logger and add logging of actual parameters after global variable processing (Adrien Berchet - [9984d60](https://github.com/BlueBrain/synthesis-workflow/commit/9984d606d20692b94fba8d4632476361e9112614)) +- Fix CI (Adrien Berchet - [1a8ac95](https://github.com/BlueBrain/synthesis-workflow/commit/1a8ac951c383cb1cc6835db93d72fcf3788725f0)) +- Improve validation configuration (Adrien Berchet - [75c7aa6](https://github.com/BlueBrain/synthesis-workflow/commit/75c7aa6d73ab88a11edf0cd7d7eadff401d12662)) +- Add CLI and rework logging (Adrien Berchet - [eaa27b9](https://github.com/BlueBrain/synthesis-workflow/commit/eaa27b9a6430a6c1940ff8afeae9958f52889db1)) +- Fix logger for region-grower (Adrien Berchet - [a853dd5](https://github.com/BlueBrain/synthesis-workflow/commit/a853dd56748530cf121b07241ee918a7c72038fe)) +- Add a new target class that add a prefix to its path (Adrien Berchet - [9be3c43](https://github.com/BlueBrain/synthesis-workflow/commit/9be3c432b443c48ba55680b388739c92672e6536)) +- Use specific targets to improve output directory tree (Adrien Berchet - [6ebdf5b](https://github.com/BlueBrain/synthesis-workflow/commit/6ebdf5be08cc52435d614eb404345a8a39d64cdf)) +- Improved a few things (arnaudon - [3103154](https://github.com/BlueBrain/synthesis-workflow/commit/31031549d907f8cad82466215c6c7e9aff9898ee)) +- Clean vacuum workflow (Adrien Berchet - [c7736c7](https://github.com/BlueBrain/synthesis-workflow/commit/c7736c75778d13179303bb0449d006d498d0fba6)) +- Use absolute imports (Adrien Berchet - [7fc1c4d](https://github.com/BlueBrain/synthesis-workflow/commit/7fc1c4dd9311a4c76f6840126c91a31f3cb5b255)) +- Use joblib everywhere instead of multiprocessing (Adrien Berchet - [cc6c792](https://github.com/BlueBrain/synthesis-workflow/commit/cc6c792215f32ecc73d87bf08bbf3c856ab0ca0d)) +- Improve plot_collage (Adrien Berchet - [673282f](https://github.com/BlueBrain/synthesis-workflow/commit/673282f40dcd08bf94d57da7f9289ab29e7a2a90)) +- Improve axon grafting (arnaudon - [f095bed](https://github.com/BlueBrain/synthesis-workflow/commit/f095bed32a7d01c29b02283da9317e02e868ed73)) +- Make plots more robust ; Fix collage tasks (Adrien Berchet - [a5fd59f](https://github.com/BlueBrain/synthesis-workflow/commit/a5fd59f2d0a9fcb6423d2b7585756514a2853816)) +- small updates (arnaudon - [8156aaf](https://github.com/BlueBrain/synthesis-workflow/commit/8156aafd5e8655fc9f5ad2b7b02c33a96855d154)) +- Transform all luigi.tasks into WorkflowTask and improve outputs (Adrien Berchet - [db706cc](https://github.com/BlueBrain/synthesis-workflow/commit/db706cc932e7151ba38ddf051c12b8184c58b929)) +- Add task to build a circuit MV3 file (Adrien Berchet - [4c19f80](https://github.com/BlueBrain/synthesis-workflow/commit/4c19f80be14a31008d7a54d2daf80dc2864a3afa)) +- Add task to build a morphs_df file (Adrien Berchet - [debf8a6](https://github.com/BlueBrain/synthesis-workflow/commit/debf8a6e4f96d3fc820595999c429267a29f2fa7)) +- Optimize test distribution among processes and pylint (Adrien Berchet - [acd4962](https://github.com/BlueBrain/synthesis-workflow/commit/acd4962a247cbca7dd639a5c961bc5322ccab277)) +- A None value for mtypes means that all mtypes are taken (Adrien Berchet - [8c92176](https://github.com/BlueBrain/synthesis-workflow/commit/8c92176968d75f52edf63119cb0842db02c398d3)) +- Add task to checkout configuration from repository (Adrien Berchet - [b26d226](https://github.com/BlueBrain/synthesis-workflow/commit/b26d226700864b26faf660800211378f94a0c878)) +- Add a test for luigi_tools.target_remove() (Adrien Berchet - [c6d1286](https://github.com/BlueBrain/synthesis-workflow/commit/c6d12869fb5a0b0506a93d2f5fbd9bf867dc9961)) +- Improve parallel massively (arnaudon - [534cfdc](https://github.com/BlueBrain/synthesis-workflow/commit/534cfdc055a2bc389c6566ed3c7dbe47169cd41a)) +- Affine fit for path distance (arnaudon - [816e2ea](https://github.com/BlueBrain/synthesis-workflow/commit/816e2ea066408d7d256e6c9565de5e9dd5ba7902)) +- Fix axon_morphs_base_dir extraction (Adrien Berchet - [65b4574](https://github.com/BlueBrain/synthesis-workflow/commit/65b4574b8dfb3522b58b07afb89c2af690f4225f)) +- Use luigi's hook to log parameter values (Adrien Berchet - [d82615a](https://github.com/BlueBrain/synthesis-workflow/commit/d82615a6be3189fc618d95b5117938d04902df55)) +- Add diametrizer in vacuum synthesis (Adrien Berchet - [123c36a](https://github.com/BlueBrain/synthesis-workflow/commit/123c36a9812466dd9cc165ac9a29765def6f43d4)) +- Improve doc (Adrien Berchet - [73e5794](https://github.com/BlueBrain/synthesis-workflow/commit/73e5794e0f3dccdef7a6e410c69bc6322aaf294f)) +- Setup pytest and update requirements (Adrien Berchet - [efe3ee1](https://github.com/BlueBrain/synthesis-workflow/commit/efe3ee1f0036895564e78ed27ac16ed77412f69c)) +- Improve Synthesize dependency of PlotScale (Adrien Berchet - [10d930b](https://github.com/BlueBrain/synthesis-workflow/commit/10d930b224e32d3287137b09b5563a3adb9e0c72)) +- Make the PlotCollage task much faster (Adrien Berchet - [cf27173](https://github.com/BlueBrain/synthesis-workflow/commit/cf27173078957c6afb000cc9ffba4d9f05f99aff)) +- Set requirements (Adrien Berchet - [ed8c2b3](https://github.com/BlueBrain/synthesis-workflow/commit/ed8c2b33246bd286fa61df3fc8ca9b107787815e)) +- Fix lint errors and add auto generation of version.py (Adrien Berchet - [1bb1a08](https://github.com/BlueBrain/synthesis-workflow/commit/1bb1a08b1f70b147b2d5ebb7ed2bdc9fa55c99f2)) +- Hide some warnings (Adrien Berchet - [80b55a8](https://github.com/BlueBrain/synthesis-workflow/commit/80b55a8945b9b2495f290b170ed2f09765e9df23)) +- Optimize validation.get_layer_info() (Adrien Berchet - [e47176b](https://github.com/BlueBrain/synthesis-workflow/commit/e47176b535bae5a07ca77307299c109bc881fcb4)) +- Optimize circuit slicing (Adrien Berchet - [8f2d7f2](https://github.com/BlueBrain/synthesis-workflow/commit/8f2d7f2c9b16e30688b643902fbf27ba4ff2eedd)) +- Fix create_axon_morphologies_tsv() (Adrien Berchet - [7813ece](https://github.com/BlueBrain/synthesis-workflow/commit/7813ece00700950be6fddcd48b76a443151bed05)) +- Use 2 processes for tests (Adrien Berchet - [c4ddf19](https://github.com/BlueBrain/synthesis-workflow/commit/c4ddf199213c08862d0243b34ead38fdce69a429)) +- Merge "Improve parallel massively" (Alexis Arnaudon - [1a1b8fa](https://github.com/BlueBrain/synthesis-workflow/commit/1a1b8fade68cbed928bafc0618f963d911ca0b86)) +- Merge "Make the PlotCollage task much faster" (Alexis Arnaudon - [95676a1](https://github.com/BlueBrain/synthesis-workflow/commit/95676a17ce52b24b77a92d072b2a57b2d532bba3)) +- fix bug in task shuffle and atlas get_layers (arnaudon - [f8060f6](https://github.com/BlueBrain/synthesis-workflow/commit/f8060f68d4360551457b66ce559939f8237b25c4)) +- Minor fixes (Adrien Berchet - [31dddcb](https://github.com/BlueBrain/synthesis-workflow/commit/31dddcb58e56866653ea0f7c11d894bf6eb042b8)) +- Merge "Add test for OutputLocalTarget with absolute path and prefix" (Adrien Berchet - [69ffe7e](https://github.com/BlueBrain/synthesis-workflow/commit/69ffe7e4c4530cf92444bd407a1ed8c1c88c6f85)) +- Add test for OutputLocalTarget with absolute path and prefix (Adrien Berchet - [c18c368](https://github.com/BlueBrain/synthesis-workflow/commit/c18c36895525ac2b8c30b7384b75f0e29fa964fe)) +- Merge "Add task to checkout configuration from repository" (Adrien Berchet - [fcda863](https://github.com/BlueBrain/synthesis-workflow/commit/fcda863439aaf3174c53d574d27dafd372298b6e)) +- Cleaning warnings and add a new one when Parameters are set to None (Adrien Berchet - [eb893e8](https://github.com/BlueBrain/synthesis-workflow/commit/eb893e83f896294667df0d728c57e724639dfe28)) +- Initial empty repository (Dries Verachtert - [99d6ae2](https://github.com/BlueBrain/synthesis-workflow/commit/99d6ae28f66ba3ca70bb957cc4b02265420b01aa))