-
Notifications
You must be signed in to change notification settings - Fork 27
Analysis
- Soma Kernels
-
Branches Kernels
- Number of Profile Points
- Morphology Bounding Box
- Number of Stems
- Number of Bifurcations
- Number of Trifurcations
- Branch Type
- Apical Dendrites
- Basal Dendrites
- Axons
- Number of Neurites (Arbors)
- Number of Tips (Terminal Tips)
- Maximum Branching Order
- Maximum Path Distance
- Number of Samples per Section
- Minimum Sample Radius
- Maximum Sample Radius
- Average Sample Radius
- Number of Zero-radius Samples
- Local Bifurcation Angles
- Global Bifurcation Angles
- Total Morphology Length
- Minimum Section Length
- Maximum Section Length
- Average Section Lenght
- Number of Short Sections
- Minimum Segment Length
- Maximum Segment Length
- Average Segment Lenght
- Number of Zero-length Segments
- Total Morphology Surface Area
- Minimum Section Surface Area
- Maximum Section Surface Area
- Average Section Surface Area
- Minimum Segment Surface Area
- Maximum Segment Surface Area
- Average Segment Surface Area
- Total Morphology Volume
- Minimum Section Volume
- Maximum Section Volume
- Average Section Volume
- Minimum Segment Volume
- Maximum Segment Volume
- Average Segment Volume
The radius of the soma as reported in the morphology file.
The minimum radius of the soma as based on the reported profile points and the root samples of all the connected arbors (or stems).
The maximum radius of the soma as based on the reported profile points and the root samples of all the connected arbors (or stems).
The average radius of the soma as based on the reported profile points and the root samples of all the connected arbors (or stems).
The approximate surface area of the soma based on the reported radius in the morphology file in (μm²).
The approximate volume of the soma based on the reported radius in the morphology file in (μm²).
Number of profile points of the soma as reported in the morphology file.
We summarize the morphology bounding box by
- BBox PMin: The pMin of the bounding box.
- BBox PMin:The pMax of the bounding box.
- BBox Center:The center of the bounding box.
- BBox Bounds:The dimensions of the bounding box
The number of arbors that emanate directly from the soma. Each stem is basically an independent subtree of branches.
The total number of sections (or branches) in the morphology.
The total number of bifurcations in the morphology.
The total number of trifurcations (or sections with three children) in the morphology.
The total number of apical dendrites in the morphology. Normally, an excitatory neuronal morphology has a single apical dendrite, but we explicitly added this parameter in case the morphology has more than one.
The total number of basal dendrites in the morphology.
The total number of axons in the morphology. Normally, a neuronal morphology has a single axon, but we explicitly added this parameter in case the morphology has more than one or has no axons reconstructed.
The total number of the arbors (independent trees) in the morphology whether connected to the soma or not'
The total number number of terminal tips in the morphology.
The maximum branching order of all the arbors in the morphology.
The maximum distance along an arbor from its root sample to its most far leaf in the morphology.
The total number of samples (or digitized points) in the morphology.
The lowest number of samples a section has.
The largest number of samples a section has.
The average number of samples a section has.
The radius of the smallest sample in the morphology.
The radius of the largest sample in the morphology.
The avaerage radius of all the samples sample in the morphology.
The total number of zero-radii samples (epsilon value 1e-3 or 1 nm) in the morphology.
The local bifurcation angle is computed from the first two samples along the section.
The global bifurcation angle is computed from the first and last samples of the section.
The total length of the morophology branches.
The length of the shortest section in the morphology.
The length of the longest section in the morphology.
The average section length in the morphology.
The total number of short sections (length is smaller than the sum of the radii of the terminal samples).
The length of the shortest segment in the morphology.
The length of the longest segment in the morphology.
The average segment length in the morphology.
The total number of zero-length segments (or duplicate samples).
The surface area of the morphology.
The surface area of the smallest section in the morphology.
The surface area of the largest section in the morphology.
The average section surface area in the morphology.
The surface area of the smallest segment in the morphology.
The surface area of the largest segment in the morphology.
The average segment surface area in the morphology.
The volume of the morphology.
The volume of the smallest section in the morphology.
The volume of the largest section in the morphology.
The average section volume in the morphology.
The volume of the smallest segment in the morphology.
The volume of the largest segment in the morphology.
The average segment volume in the morphology.
Note We are adding new analysis functions to provide further analysis results on a continuous basis. If you have any questions, please contact us.
Note The table of contents was generated automatically with markdown-toc.