README.md

Bioc 2024 workshop tutorial

This is a reproducible Quarto book with reusable snippets. If you're new to Quarto books, you can explore more about them here.

Setting Up the Tutorial Locally

To get started locally, follow these steps:

• Install quarto-cli.
• Install the necessary packages listed in requirements.txt and rpackages.R.

pip install -r requirements.txt
Rscript rpackages.R

• Run quarto preview to view the HTML version of the site.

qurto preview

GitHub actions automatically publish the tutorial book whenever changes are made on the master branch.

Dockerfile

To build the docker image, (defaults to port 8889)

docker build -t bioc .
docker run -it -p 8889:8889 bioc