NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(print,discovrExperiment)
export(Rphenograph)
export(checkFcsFiles)
export(checkForFcsByteOffsetIssue)
export(clusterDiscovrExperiment)
export(downsampleFcsList)
export(find_neighbors)
export(getEventIntensities)
export(getEventZScores)
export(getFcsNEvents)
export(getMetaclusterOccupancy)
export(getSampleNames)
export(getSubjectClusters)
export(getSubjectCounts)
export(is.discovrExperiment)
export(jaccard_coeff)
export(makeMetaclusterHeatmaps)
export(metaclusterDiscovrExperiment)
export(recutMetaclusters)
export(runUmapDiscovrExperiment)
export(setupDiscovrExperiment)
import(dplyr)
import(flowCore)
importFrom(RANN,nn2)
importFrom(Rcpp,sourceCpp)
importFrom(circlize,colorRamp2)
importFrom(dplyr,group_by)
importFrom(dplyr,n)
importFrom(dplyr,rename)
importFrom(dplyr,summarise)
importFrom(flowCore,exprs)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,png)
importFrom(grid,unit)
importFrom(igraph,cluster_louvain)
importFrom(igraph,graph.data.frame)
importFrom(igraph,membership)
importFrom(igraph,modularity)
importFrom(magrittr,"%>%")
importFrom(memuse,Sys.meminfo)
importFrom(memuse,mu.size)
importFrom(methods,as)
importFrom(rlang,":=")
importFrom(rlang,.data)
importFrom(stats,as.hclust)
importFrom(stats,cutree)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stringr,regex)
importFrom(stringr,str_detect)
importFrom(stringr,str_extract)
importFrom(stringr,str_remove)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(tibble,column_to_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,gather)
importFrom(umap,umap)
importFrom(utils,read.csv)
importFrom(utils,write.csv)
useDynLib(briDiscovr)