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Optimizing Parameters for Larger Motif Window #73

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sethstaller opened this issue Mar 10, 2023 · 0 comments
Open

Optimizing Parameters for Larger Motif Window #73

sethstaller opened this issue Mar 10, 2023 · 0 comments

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@sethstaller
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sethstaller commented Mar 10, 2023 •
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Hello:

Trying to run motiffinder on larger RNA windows ~150 - 250nt. We are getting fail states at the Structure-to-GSPAN step and are unable to generate clusters.

Any advice on what parameters to fine-tune as you open up the window?
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