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please update the the docker run parameter, the docker executable: plasmidID.sh not plasmidID
docker run -v $PWD:$PWD -w $PWD buisciii/plasmidid plasmidID.sh -1 test/KPN_TEST_R1.fastq.gz -2 test/KPN_TEST_R2.fastq.gz -d test/plasmids_TEST_database.fasta -c test/contigs_KPN_TEST.fasta --no-trim -s KPN
The text was updated successfully, but these errors were encountered:
Thanks for reporting! Will fix for the next release :)
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saramonzon
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please update the the docker run parameter,
the docker executable: plasmidID.sh not plasmidID
docker run -v $PWD:$PWD -w $PWD buisciii/plasmidid plasmidID.sh
-1 test/KPN_TEST_R1.fastq.gz
-2 test/KPN_TEST_R2.fastq.gz
-d test/plasmids_TEST_database.fasta
-c test/contigs_KPN_TEST.fasta
--no-trim
-s KPN
The text was updated successfully, but these errors were encountered: