Vardict adding 1 additional count to VD "Variant Depth"

[BJWiley233]

Hi,

Vardict indicated an ALT depth 2 for an SNV however I confirm multiple ways: pysam, IGV, bcftools mpileup; and all indicate there is only one count for a T in a C > T SNV mutation. I even included ambiguous reads in bcftools mpileup; and same thing. Let me know if I can send a bam file of all the reads for this SNV. It would be 18676 reads for deep sequencing project. Thanks

Brian