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Main.py
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# -*- coding: utf-8 -*-
"""
Created on Tue May 21 23:32:43 2013
@author: Antoine Valera
"""
import sys,os
from PyQt4 import QtCore, QtGui
from matplotlib import pyplot,numpy
#import Analysis,Navigate,MyMplWidget,Mapping,Requete.Requete,Histogram,Fitting,Import
class Main(QtGui.QWidget,object):#
"""This Class set up the Main Window"""
def __init__(self):
self.__name__="Main"
super(Main,self).__init__()
self.setAcceptDrops(True)
#Drag and Drop section
# def dragEnterEvent(self, event):
# if event.mimeData().hasUrls:
# event.accept()
# else:
# event.ignore()
def _all(self,All=False):
List=[]
i=self.__name__
for j in dir(eval(i)):
if All==False and j[:2] == '__':
pass
else:
List.append(i+'.'+j)
for i in List:
print i
def File_loading(self):
"""
This function load the Userpref.txt file
or create a new one if it doesn't exist.
It also copy these values in self.user_parameters
"""
self.userpath=os.getenv("HOME")
if self.userpath == None: #Happens when started as executable, out of Winpython
value,ok = QtGui.QInputDialog.getText(self,
'Winpython Path',
"""UserPath Not Found, please indicate Your WinPython installation Folder""",
QtGui.QLineEdit.Normal,
'C:\Users\Antoine\WinPython-64bit-2.7.10.1')
value=str(value)
self.userpath = value+'\settings'
self.Script_Path=os.path.dirname(os.path.realpath(__file__))
#if self.userpath == None:
# self.userpath='C:\\Users\\Downstairs-PC\\WinPython-32bit-2.7.10.2\\settings'
self.path = self.userpath+"/.SynaptiQs/Core/Userpref.txt" #Adresse du Fichier de parametres. Penser a laisser les droits d'ecriture
self.Analysis_Preferences_Path=self.userpath+"/.SynaptiQs/Core/Analysis_Pref.txt"
self.Mapping_Preferences_Path=self.userpath+"/.SynaptiQs/Core/Mapping_Pref.txt"
if os.path.isfile(self.path) and os.path.isfile(self.Analysis_Preferences_Path) and os.path.isfile(self.Mapping_Preferences_Path): #Si le fichier Userpref existe:
print "########### SynaptiQs Started ############"
print "-----------> Loading Preference Files"
print "-----------> Userpref.txt Loaded correctly"
parameters = open(self.path) #On ouvre
self.user_parameters=parameters.readlines() #on lit
if len(self.user_parameters) != 40: #S'il Ny a pas 10 lignes, on etend le fichier à 30 lignes
self.user_parameters.extend(['']*(40-len(self.user_parameters)))
self.param_inf=['']*40 #On cree un liste des parametres
#Lecture des parametres:
#Ligne0 Last SQLite DB
#Ligne1 Last MySQL User
#Ligne2 Last MySQL Password
#Ligne3 Last MySQL DBname
#Ligne4 Last MySQL DB_IP_adress:port
#Ligne5 Basic Analysis.tag Fields
#Ligne6 Working folder
#Ligne7 *empty*
#Ligne8 *empty*
#Ligne9 *empty*
#Lignes10 à 40 : Main.measurecoord dans l'ordre suivant:
# "Baseline1_begin"10
# "Baseline1_end"11
# "Peak1_begin"12
# "Peak1_end"13
# "Baseline2_begin"14
# "Baseline2_end"15
# "Peak2_begin"16
# "Peak2_end"17
# "Baseline3_begin"18
# "Baseline3_end"19
# "Peak3_begin"20
# "Peak3_end"21
# "Baseline1_size"22
# "Peak1_size"23
# "Baseline2_size"24
# "Peak2_size"25
# "Baseline3_size"26
# "Peak3_size"27
# "Baseline1_meth"28
# "Peak1_meth"29
# "Baseline2_meth"30
# "Peak2_meth"31
# "Baseline3_meth"32
# "Peak3_meth"33
#Securités pour le bon lancement de l'appli, ême en l'absence de paramètres:
if self.user_parameters[0]=='\n' or '': #S'il n'y a pas de base de données SQLlite
self.user_parameters[0] = self.userpath+"/Core/.SynaptiQs/empty.db"
rescuelist=[198.0,200.0,202.0,215.0,218.0,220.0,222.0,235.0,238.0,240.0,242.0,255.0,1.0,1.0,1.0,1.0,1.0,1.0, 'Min', 'Min', 'Min', 'Min', 'Min', 'Min'] #les points par defaut, pour la mesure d'un triplet à 50Hz commençant 200ms après le départ
for i in range(10,34):
if self.user_parameters[i]=='': #S'il n'y a pas paramètres de mesure
self.user_parameters[i] = str(rescuelist[i-10])
for i in range(len(self.user_parameters)):
self.param_inf[i] = str(self.user_parameters[i].split('\n')[0])
#on la remplit avec le contenu du fichier de préférences
self.desktop=self.param_inf[6]
parameters.close() #on ferme le fichier
#Dans le pire des cas, le fichier a été supprimé
else : #Si le fichier de parametres n'existe pas, on le crée, mais il faut les droits d'ecriture dans le dossier
if not os.path.isdir(self.userpath+"/.SynaptiQs/"):
os.makedirs(self.userpath+"/.SynaptiQs/")
if not os.path.isdir(self.userpath+"/.SynaptiQs/Core/"):
os.makedirs(self.userpath+"/.SynaptiQs/Core/")
print "error, Userpref.txt does not exist, file created"
try:
parameters = open(self.path,'w')
self.user_parameters=parameters.readlines()
if len(self.user_parameters) != 40: #S'il Ny a pas 10 lignes, on etend le fichier à 30 lignes
self.user_parameters.extend(['']*(40-len(self.user_parameters)))
self.param_inf=['']*40 #On cree un liste des parametres
#self.param_inf=['']*30
self.user_parameters[0] = self.userpath+"/Core/.SynaptiQs/empty.db"
for i in range(len(self.user_parameters)):
self.param_inf[i] = str(self.user_parameters[i].split('\n')[0])
parameters.close()
msgBox = QtGui.QMessageBox()
msgBox.setText(
"""
<b>Welcome To SynaptiQs</b>
<p>This is your first faunch, (or maybe you just deleted Userpref.txt)
<p>A new Userpref.txt file was created.
<p>SynaptiQs Will now exit. Please Restart. Default value will be used""")
msgBox.exec_()
pyplot.show()
except IOError: #si le fichier ne peut pas etre crée, erreur
print "You don't have the right to print in this folder"
msgBox = QtGui.QMessageBox()
msgBox.setText(
"""
<b>SynaptiQs was unable to create the Userpref.txt file.</b>
<p>Please give writting access to SynaptiQs folder to all users.
<p>SynaptiQs should be in
$HOME/.SynaptiQs/Core/""")
msgBox.exec_()
sys.exit()
#sys.exit(app.exec_())
#Then, we open the Analysis_Pref.txt file, which contains user defined parameters for measurments
try:
print "-----------> Analysis_Pref.txt Loaded correctly"
parameters = open(self.Analysis_Preferences_Path)
Analysis_Preferences=parameters.readlines() #on lit
self.Analysis_Preferences=['']*len(Analysis_Preferences)
for i in range(len(Analysis_Preferences)):
Analysis_Preferences[i]=Analysis_Preferences[i].replace('\n','')
self.Analysis_Preferences[i] = eval(Analysis_Preferences[i])
self.List_of_User_Defined_Parameters=[]
for i in range(len(self.Analysis_Preferences)):
self.List_of_User_Defined_Parameters.append(self.Analysis_Preferences[i][0])
parameters.close() #on ferme le fichier
except : #Si le fichier de parametres n'existe pas, on le crée, mais il faut les droits d'ecriture dans le dossier
print "error, Analysis_Pref.txt does not exist, file created"
parameters = open(self.Analysis_Preferences_Path,'w')
self.Analysis_Preferences=[]
self.Analysis_Preferences.append(['Default',198.0,200.0,202.0,215.0,218.0,220.0,222.0,235.0,238.0,240.0,242.0,255.0,1.0,1.0,1.0,1.0,1.0,1.0])
parameters.close()
self.List_of_User_Defined_Parameters=[]
for i in range(len(self.Analysis_Preferences)):
self.List_of_User_Defined_Parameters.append(self.Analysis_Preferences[i][0])
def Create_Window(self):
"""
This function create the Main window and all the buttons
"""
#Creation de la fenetre principale
self.MainWindow = QtGui.QMainWindow()
self.MainWindow.setContextMenuPolicy(0)
#Les propriété de la fenetre principale
self.MainWindow.resize(1280, 350) #la taille d'origine de la fenetre
self.MainWindow.setAnimated(True) #Donne un aspect fluide au déplacement des Widget;Facultatif
self.MainWindow.setWindowTitle("SynaptiQs")
#Creation de la barre de menu
#Definition de la barre de menu
self.File_Menu = QtGui.QMenu("File")
self.Plugins_Menu = QtGui.QMenu("Plugins")
self.About_Menu = QtGui.QMenu("About")
self.Options_Menu = QtGui.QMenu("Options")
self.Mapping_Options_Menu = QtGui.QMenu("Mapping Options")
self.Analysis_Options_Menu = QtGui.QMenu("Analysis Options")
self.File_Menu.addAction("Show Main Figure",self.Show_Main_Figure,"CTRL+S")
self.File_Menu.addAction("Navigator",Infos.Navigator)
self.File_Menu.addAction("Create db",Infos.Create_DB)
self.File_Menu.addAction("Edit DB Structure",Requete.Modify_DB_Structure,"CTRL+E")
self.File_Menu.addAction("Import Data",Infos.Import_Data,"CTRL+L")
self.File_Menu.addAction("Data Browser",Infos.Data_Browser,"CTRL+D")
self.File_Menu.addAction("SpikeSorting",Infos.SpikeSorting)
self.File_Menu.addAction("Tree View",Infos.Tree_View,"CTRL+T")
self.File_Menu.addAction("start OpenElectrophy",Infos.Start_OE,"CTRL+O")
self.File_Menu.addAction("IPython Console",self.EmbeddedIpython,"CTRL+I")
self.File_Menu.addAction("Exit",QtCore.QCoreApplication.instance().quit,"CTRL+Q")
self.Mapping_Options_Menu.addAction("Load Mapping Coordinate File",Mapping.Load_Coordinates)
#self.Mapping_Options_Menu.addAction("Mapping on Negative currents",self.Update_Menu_Options)
self.Mapping_Options_Menu.addAction("More Options",Mapping.More_Options)
self.Analysis_Options_Menu.addAction("Events Options",Analysis.ShowEventsOptions)
self.About_Menu.addAction("Help",Infos.Help,'CTRL+H')
self.About_Menu.addAction("Plugins Folder",Infos.Open_a_Folder,'CTRL+P')
self.About_Menu.addAction("UserPref Folder",Infos.Open_a_Folder,'CTRL+U')
self.About_Menu.addAction("About",Infos.About)
self.FastMode= False
self.Sort_Blocks_by_FileName = False
#self.Options_Menu.addAction("Fast Mode",self.Update_Menu_Options,'CTRL+F').setCheckable(True) OBSOLETE
#self.Options_Menu.addAction("Sort Block by File Name (not working yet)",self.Update_Menu_Options,'CTRL+B').setCheckable(True)
self.Options_Menu.addAction("Select Saving Directory",self.Saving_Directory)
self.Options_Menu.addAction("Fitting Tools",Fitting.Helper)
self.Options_Menu.addAction("Histogram Manager",Histogram.Manager)
self.MainWindow.menuBar().addMenu(self.File_Menu)
self.MainWindow.menuBar().addMenu(self.Plugins_Menu)
self.MainWindow.menuBar().addMenu(self.Options_Menu)
self.MainWindow.menuBar().addMenu(self.Analysis_Options_Menu)
self.MainWindow.menuBar().addMenu(self.Mapping_Options_Menu)
self.MainWindow.menuBar().addMenu(self.About_Menu)
#Definition du Widget de Requete
self.Whole_Request = QtGui.QDockWidget(self.MainWindow)
self.MainWindow.addDockWidget(4,self.Whole_Request) #On attache le Widget au Widget parent, et on definit sa position
self.Whole_Request.setMinimumSize(330,200) #definit la taille minimale du Widget (largeur, hauteur)
self.SQLTabWidget = QtGui.QTabWidget(self.Whole_Request)
self.SQLTabWidget.setGeometry(0,0,330,50)
self.FilteringWidget = QtGui.QWidget(self.Whole_Request)
self.FilteringWidget.setWindowTitle("Filtering_Widget")
self.FilteringWidget.setGeometry(0,52,330,200)
self.FilteringWidget.setMinimumSize(330,300)
self.RequestWidget = QtGui.QWidget()
self.SQLTabWidget.addTab(self.RequestWidget,"MySQL_Request")
self.RequestWidget.setWindowTitle("MySQL_Request")
self.RequestWidget.setMinimumSize(330,300)
self.SQLIteRequestWidget = QtGui.QWidget()
self.SQLTabWidget.addTab(self.SQLIteRequestWidget,"SQLite Request")
self.SQLIteRequestWidget.setWindowTitle("SQLIteRequestWidget")
self.SQLIteRequestWidget.setMinimumSize(330,300)
self.LocalFileWidget = QtGui.QWidget()
self.SQLTabWidget.addTab(self.LocalFileWidget,"Local File")
self.LocalFileWidget.setWindowTitle("LocalFileWidget")
self.LocalFileWidget.setMinimumSize(330,800)
self.NavigationWidget = QtGui.QDockWidget(self.MainWindow)
self.NavigationWidget.setWindowTitle("Navigation Tools")#donne un titre à la fenetre
self.MainWindow.addDockWidget(4,self.NavigationWidget)
self.NavigationWidget.setMinimumSize(260,300)
self.ImportWindow = Import.MyWindow(self.LocalFileWidget)
self.ImportWindow.setGeometry(0,0,260,160)
Navigate.ArrayList=[]
Navigate.VarList={}
#Definition du Widget d'analyse
self.Whole_Analysis = QtGui.QDockWidget(self.MainWindow)
self.MainWindow.addDockWidget(4,self.Whole_Analysis) #On attache le Widget au WIdget parent, et on definit sa position
self.Whole_Analysis.setMinimumSize(400,300) #definit la taille minimale du Widget (largeur, hauteur)
self.Analyze_Tab_Widget = QtGui.QTabWidget(self.Whole_Analysis)
self.Analyze_Tab_Widget.setMinimumSize(400,300)
self.AnalysisWidget = QtGui.QWidget()
self.Analyze_Tab_Widget.addTab(self.AnalysisWidget,"Signal Measures")
self.AnalysisWidget.setWindowTitle("Measure Tools")
self.SpikesWidget = QtGui.QWidget()
self.Analyze_Tab_Widget.addTab(self.SpikesWidget,"Spike/LFP Analysis")
self.SpikesWidget.setWindowTitle("Spike Tools")
self.MappingWidget = QtGui.QWidget()
self.Analyze_Tab_Widget.addTab(self.MappingWidget,"Mapping")
self.MappingWidget.setWindowTitle("Mapping Tools")
Mapping.Tools()#Only If using mapping functions, which I do...
#Les boutons
#Les Boutons de Requete
self.GetData = QtGui.QPushButton(self.FilteringWidget)
self.GetData.setGeometry(5, 160, 83, 23)
self.GetData.setText("Get Data")
self.GetData.setToolTip("""Do the SQL request.\nIf you need the spiketrains,\nplease select a Neuron """)
self.Reset_Check = QtGui.QCheckBox(self.FilteringWidget)
self.Reset_Check.setGeometry(5, 200, 120, 23)
self.Reset_Check.setText( "Reset All Tags")
self.Reset_Check.setToolTip("""To reset the Analogsignal.tag field\n Check this box and do the SQL request""")
self.Personalize = QtGui.QPushButton(self.FilteringWidget)
self.Personalize.setGeometry(5, 180, 110, 23)
self.Personalize.setText("Personalize Request")
self.Post_Filtering_Button = QtGui.QPushButton(self.FilteringWidget)
self.Post_Filtering_Button.setGeometry(115, 180, 100, 23)
self.Post_Filtering_Button.setText("Add Extra Filtering")
self.Reset_Fields = QtGui.QPushButton(self.FilteringWidget)
self.Reset_Fields.setGeometry(115, 200, 100, 23)
self.Reset_Fields.setText("Reset Fields")
self.SaveData = QtGui.QPushButton(self.FilteringWidget)
self.SaveData.setGeometry(240, 180, 83, 23)
self.SaveData.setText( "Save Params")
self.SaveData.setToolTip("""Save the Tags in the\nAnalogsignal.tag field""")
self.Tagging_Tools = QtGui.QPushButton(self.FilteringWidget) #creation du bouton
self.Tagging_Tools.setGeometry(240, 200, 83, 23) #taille et position (X,Y,Xsize,Ysize)
self.Tagging_Tools.setText( "Tagging Tools")
self.IOTools = QtGui.QDockWidget(self.FilteringWidget)
self.IOTools.setGeometry(240, 0, 83, 123)
self.ExistingSweeps=[]
self.Current_or_Average = QtGui.QComboBox(self.IOTools)
self.Current_or_Average.setGeometry(0, 0, 83, 23)
self.Current_or_Average.setSizeAdjustPolicy(0)
self.Current_or_Average.addItems(self.ExistingSweeps)
self.SaveName = QtGui.QLineEdit(self.IOTools)
self.SaveName.setGeometry(0, 20, 83, 23)
#self.SaveName.setText("mean")
self.SaveName.setPlaceholderText( "set file suffix")
self.SaveTrace = QtGui.QPushButton(self.IOTools)
self.SaveTrace.setGeometry(0, 40, 83, 23)
self.SaveTrace.setText( "Save Array")
self.SaveTrace.setToolTip("""You can save the selected trace in the "User" folder.\nWrite here the name of the file (without extension).\nTo save in a subfolder, please complete the path\n Exemple: \subfolder\ffilename will save filename.txt in\n \HOME\USER\subfolder\ """)
self.Send_To_Igor = QtGui.QPushButton(self.IOTools)
self.Send_To_Igor.setGeometry(0, 60, 83, 23)
self.Send_To_Igor.setText( "Send To Igor")
self.ShellButton = QtGui.QPushButton(self.IOTools) #creation du bouton
self.ShellButton.setGeometry(0, 80, 83, 23) #taille et position (X,Y,Xsize,Ysize)
self.ShellButton.setText( "IPython Shell")
self.ShellButton.setEnabled(1)
self.SendToSQl = QtGui.QPushButton(self.IOTools) #creation du bouton
self.SendToSQl.setGeometry(0, 100, 83, 23) #taille et position (X,Y,Xsize,Ysize)
self.SendToSQl.setText( "Send to SQLite")
self.Menu_with_List_of_Positive_Steps = QtGui.QMenu()
self.Menu_with_List_of_Negative_Steps = QtGui.QMenu()
Navigate.Step=6 #The default Value
for step in ["+2","+3","+4","+5","+6","+7","+8","+9","+10","+20","+50"]:
Plus_Button = self.Menu_with_List_of_Positive_Steps.addAction(step)
self.connect(Plus_Button,QtCore.SIGNAL('triggered()'), lambda step=step: Navigate.Modify_Step_Range(step))
for step in ["-2","-3","-4","-5","-6","-7","-8","-9","-10","-20","-50"]:
Minus_Button = self.Menu_with_List_of_Negative_Steps.addAction(step)
self.connect(Minus_Button,QtCore.SIGNAL('triggered()'), lambda step=step: Navigate.Modify_Step_Range(step))
#Les boutons de Navigation
self.Previous = QtGui.QPushButton(self.NavigationWidget)
self.Previous.setGeometry(5, 40, 80, 23)
self.Previous.setText( "Previous")
self.Previous.setShortcut('Left')
self.Next = QtGui.QPushButton(self.NavigationWidget)
self.Next.setGeometry(85, 40, 80, 23)
self.Next.setText( "Next")
self.Next.setShortcut('Right')
self.FirstSweep = QtGui.QPushButton(self.NavigationWidget) #creation du bouton
self.FirstSweep.setGeometry(5, 80, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.FirstSweep.setText( "First Sweep")
self.FirstSweep.setShortcut('Home')
self.LastSweep = QtGui.QPushButton(self.NavigationWidget) #creation du bouton
self.LastSweep.setGeometry(85, 80, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.LastSweep.setText( "Last Sweep")
self.LastSweep.setShortcut('End')
self.Minus_Step = QtGui.QPushButton(self.NavigationWidget) #creation du bouton
self.Minus_Step.setGeometry(35, 60, 50, 23) #taille et position (X,Y,Xsize,Ysize)
self.Minus_Step.setText( "- 6")
self.Minus_Step.setShortcut('PgDown')
self.Choose_Negative_Step = QtGui.QPushButton(self.NavigationWidget) #creation du bouton
self.Choose_Negative_Step.setGeometry(5, 60, 30, 23) #taille et position (X,Y,Xsize,Ysize)
self.Choose_Negative_Step.setMenu(self.Menu_with_List_of_Negative_Steps)
self.Plus_Step = QtGui.QPushButton(self.NavigationWidget) #creation du bouton
self.Plus_Step.setGeometry(115, 60, 50, 23) #taille et position (X,Y,Xsize,Ysize)
self.Plus_Step.setText( "+ 6")
self.Plus_Step.setShortcut('PgUp')
self.Choose_Positive_Step = QtGui.QPushButton(self.NavigationWidget) #creation du bouton
self.Choose_Positive_Step.setGeometry(85, 60, 30, 23) #taille et position (X,Y,Xsize,Ysize)
self.Choose_Positive_Step.setMenu(self.Menu_with_List_of_Positive_Steps)
#From To
self.From = QtGui.QLineEdit(self.NavigationWidget)
self.From.setGeometry(5, 120, 80, 22)
self.From.setText("0")
self.From.setPlaceholderText( "UserName")
self.To = QtGui.QLineEdit(self.NavigationWidget)
self.To.setGeometry(85, 120, 80, 22)
self.To.setText("Max")
self.To.setPlaceholderText( "UserName")
self.Delete_Current_Segment_Button = QtGui.QPushButton(self.NavigationWidget) #creation du bouton
self.Delete_Current_Segment_Button.setGeometry(120,270,120,30) #taille et position (X,Y,Xsize,Ysize)
self.Delete_Current_Segment_Button.setText( "Delete current Signal")
#Les boutons de fonction
self.Average = QtGui.QPushButton(self.AnalysisWidget) #creation du bouton
self.Average.setGeometry(5, 45, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.Average.setText( "Average") #Le texte dans le bouton
self.Superimpose = QtGui.QPushButton(self.AnalysisWidget) #creation du bouton
self.Superimpose.setGeometry(5, 65, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.Superimpose.setText( "Superimpose")
self.Start_Spike_Sorting = QtGui.QPushButton(self.SpikesWidget) #creation du bouton
self.Start_Spike_Sorting.setGeometry(5, 5, 120, 23) #taille et position (X,Y,Xsize,Ysize)
self.Start_Spike_Sorting.setText( "Spike Sorting")
self.Rasterplot = QtGui.QPushButton(self.SpikesWidget) #creation du bouton
self.Rasterplot.setGeometry(5, 25, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.Rasterplot.setText( "Raster plot")
self.Raster_Start = QtGui.QLineEdit(self.SpikesWidget)
self.Raster_Start.setGeometry(100, 25, 80, 23)
self.Raster_Start.setText('0.200')
self.Raster_Start.setPlaceholderText("start in s")
self.Raster_Duration = QtGui.QLineEdit(self.SpikesWidget)
self.Raster_Duration.setGeometry(200, 25, 80, 23)
self.Raster_Duration.setText('0.050')
self.Raster_Duration.setPlaceholderText( "Duration in s")
self.ShowEvents = QtGui.QPushButton(self.SpikesWidget) #creation du bouton
self.ShowEvents.setGeometry(5, 105, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.ShowEvents.setText( "Show Events")
self.Display_Spikes_Button = QtGui.QCheckBox(self.SpikesWidget)
self.Display_Spikes_Button.setGeometry(5, 45, 120, 21)
self.Display_Spikes_Button.setText( "Show/Hide Spikes")
self.Show_Scalogram_Button = QtGui.QPushButton(self.SpikesWidget)
self.Show_Scalogram_Button.setGeometry(5, 65, 180, 21)
self.Show_Scalogram_Button.setText( "Sweep Scalogram")
self.Scalogram_Min = QtGui.QLineEdit(self.SpikesWidget)
self.Scalogram_Min.setGeometry(200, 65, 80, 21)
self.Scalogram_Min.setText('None')
self.Scalogram_Max = QtGui.QLineEdit(self.SpikesWidget)
self.Scalogram_Max.setGeometry(290, 65, 80, 21)
self.Scalogram_Max.setText('None')
self.Show_Concatenated_Scalogram_Button = QtGui.QPushButton(self.SpikesWidget)
self.Show_Concatenated_Scalogram_Button.setGeometry(5, 85, 180, 21)
self.Show_Concatenated_Scalogram_Button.setText( "Sweep Concatenated Scalogram")
self.ModifySpikes = QtGui.QCheckBox(self.SpikesWidget) #creation du bouton
self.ModifySpikes.setGeometry(5, 240, 120, 23) #taille et position (X,Y,Xsize,Ysize)
self.ModifySpikes.setText( "Modify Spikes")
self.ModifySpikes.setDisabled(0)
self.CurrentSpikeTrainToModify = QtGui.QSpinBox(self.SpikesWidget)
self.CurrentSpikeTrainToModify.setGeometry(105, 240, 120, 23) #taille et position (X,Y,Xsize,Ysize)
self.CurrentSpikeTrainToModify.setValue(0)
self.CurrentSpikeTrainToModify.setMaximum(1)
self.CurrentSpikeTrainToModify.setMinimum(0)
self.CurrentSpikeTrainToModify.setSingleStep(1)
self.CurrentSpikeTrainToModify.setDisabled(0)
self.Measure_Button = QtGui.QPushButton(self.AnalysisWidget) #creation du bouton
self.Measure_Button.setGeometry(5, 85, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.Measure_Button.setText( "Measure!")
self.Checkup = QtGui.QPushButton(self.AnalysisWidget) #creation du bouton
self.Checkup.setGeometry(5, 105, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.Checkup.setText( "Manip Diagnosis")
self.inf = QtGui.QPushButton(self.AnalysisWidget) #creation du bouton
self.inf.setGeometry(5, 125, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.inf.setText( "Infos")
#Les Champs de Filtrage
self.SQLite_path = QtGui.QLineEdit(self.SQLIteRequestWidget)
self.SQLite_path.setGeometry(2, 0, 290, 22)
self.SQLite_path.setText(self.param_inf[0])
self.SQLite_path.setPlaceholderText( "Path")
self.SQLight_File_Select_Window = QtGui.QPushButton(self.SQLIteRequestWidget)
self.SQLight_File_Select_Window.setGeometry(292, 0, 27, 22)
self.SQLight_File_Select_Window.setText( "...")
self.DBinf = [self.param_inf[1],self.param_inf[2],self.param_inf[3],self.param_inf[4]] ##Pour court circuiter l'enregistrement des parametres
self.User = QtGui.QLineEdit(self.RequestWidget)
self.User.setGeometry(5, 0, 70, 22)
self.User.setText(self.DBinf[0])
self.User.setPlaceholderText( "UserName")
self.Password = QtGui.QLineEdit(self.RequestWidget)
self.Password.setGeometry(85, 0, 70, 22)
self.Password.setText(self.DBinf[1])
self.Password.setPlaceholderText( "PassWord")
self.Password.setEchoMode(2)
self.DBname = QtGui.QLineEdit(self.RequestWidget)
self.DBname.setGeometry(165, 0, 70, 22)
self.DBname.setText(self.DBinf[2])
self.DBname.setPlaceholderText( "DBName")
self.IPAdress = QtGui.QLineEdit(self.RequestWidget)
self.IPAdress.setGeometry(245, 0, 70, 22)
self.IPAdress.setText(self.DBinf[3])
self.IPAdress.setToolTip("""in my lab it's 130.79.38.117:3306""")
self.IPAdress.setPlaceholderText( "xxx.xxx.xxx.xxx:yyyy")
#La date
self.label_filter1 = QtGui.QLabel(self.FilteringWidget)
self.label_filter1.setGeometry(5, 5, 48, 14)
self.label_filter1.setText( "Date")
#Le fichier = blockid
self.label_filter2 = QtGui.QLabel(self.FilteringWidget)
self.label_filter2.setGeometry(5, 25, 48, 14)
self.label_filter2.setText( "Block id")
#La condition de manip
self.label_filter3 = QtGui.QLabel(self.FilteringWidget)
self.label_filter3.setGeometry(5, 45, 48, 14)
self.label_filter3.setText( "Condition")
#Le mode de patch
self.label_filter4 = QtGui.QLabel(self.FilteringWidget)
self.label_filter4.setGeometry(5, 65, 48, 14)
self.label_filter4.setText( "Rec Mode")
#Le numero du cannal
self.label_filter5 = QtGui.QLabel(self.FilteringWidget)
self.label_filter5.setGeometry(5, 85, 48, 14)
self.label_filter5.setText( "Channel #")
#Le numero du neurone (après spikesorting seulement)
self.label_filter6 = QtGui.QLabel(self.FilteringWidget)
self.label_filter6.setGeometry(5, 125, 48, 14)
self.label_filter6.setText( "Neuron id")
self.Filter_Date = QtGui.QComboBox(self.FilteringWidget)
self.Filter_Date.setGeometry(60, 0, 180, 22)
self.Filter_Date.addItems(["None"])
self.Filter_BlockId = QtGui.QComboBox(self.FilteringWidget)
self.Filter_BlockId.setGeometry(60, 20, 180, 22)
self.Filter_BlockId.addItems(["None"])
self.Filter_BlockInfo = QtGui.QComboBox(self.FilteringWidget)
self.Filter_BlockInfo.setGeometry(60, 40, 180, 22)
self.Filter_BlockInfo.addItems(["None"])
self.Filter_ChannelName = QtGui.QComboBox(self.FilteringWidget)
self.Filter_ChannelName.setGeometry(60, 60, 180, 22)
self.Filter_ChannelName.addItems(["None"])
self.Filter_ChannelNumber = QtGui.QComboBox(self.FilteringWidget)
self.Filter_ChannelNumber.setGeometry(60, 80, 180, 22)
self.Filter_ChannelNumber.addItems(["None"])
self.Filter_NeuronName = QtGui.QComboBox(self.FilteringWidget)
self.Filter_NeuronName.setGeometry(60, 120, 180, 22)
self.Filter_NeuronName.addItems(["None"])
self.Filter_NeuronName.setEnabled(False)
self.fileOrigin = QtGui.QLabel(self.FilteringWidget)
self.fileOrigin.setGeometry(90, 165, 200, 15)
self.fileOrigin.setText( "None")
self.LoadTags = QtGui.QPushButton(self.NavigationWidget)
self.LoadTags.setGeometry(170, 20, 80, 23)
self.LoadTags.setText( "Load Tags")
self.LoadTags.setToolTip("""Load the Tags in the\nAnalogsignal.tag["Selection"] field""")
self.TagAll = QtGui.QPushButton(self.NavigationWidget) #creation du bouton
self.TagAll.setGeometry(170, 60, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.TagAll.setText( "Tag All") #Le texte dans le bouton
self.UnTagAll = QtGui.QPushButton(self.NavigationWidget) #creation du bouton
self.UnTagAll.setGeometry(170, 80, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.UnTagAll.setText( "UnTag All") #Le texte dans le bouton
self.Invert = QtGui.QPushButton(self.NavigationWidget) #creation du bouton
self.Invert.setGeometry(170, 100, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.Invert.setText( "Invert Tags") #Le texte dans le bouton
self.Correspondance_info = QtGui.QPushButton(self.NavigationWidget) #creation du bouton
self.Correspondance_info.setGeometry(170, 120, 80, 23) #taille et position (X,Y,Xsize,Ysize)
self.Correspondance_info.setText( "Id Links Infos")
#Les checkbox
self.Tagging_Button = QtGui.QCheckBox(self.NavigationWidget)
self.Tagging_Button.setGeometry(170, 40, 80, 21)
self.Tagging_Button.setText( "Tag")
self.Tagging_Button.setShortcut('T')
self.Display_Measures_Button = QtGui.QCheckBox(self.AnalysisWidget)
self.Display_Measures_Button.setGeometry(5, 200, 80, 21)
self.Display_Measures_Button.setText( "Measuring")
self.Display_Measures_Button.setObjectName("Display_Measures_Button")
self.Analyze_Filtered_Traces_Button = QtGui.QCheckBox(self.AnalysisWidget)
self.Analyze_Filtered_Traces_Button.setGeometry(5, 220, 120, 21)
self.Analyze_Filtered_Traces_Button.setText( "Analyze filtered")
self.Display_Charge_Button = QtGui.QCheckBox(self.AnalysisWidget)
self.Display_Charge_Button.setGeometry(5, 240, 120, 21)
self.Display_Charge_Button.setText( "Show Charge")
self.Remove_Leak_Button = QtGui.QCheckBox(self.AnalysisWidget)
self.Remove_Leak_Button.setGeometry(130, 200, 120, 21)
self.Remove_Leak_Button.setText( "Remove Leak")
self.Remove_Leak_Button.setObjectName("Remove_Leak_Button")
self.Measure_From_Baseline1_Button = QtGui.QCheckBox(self.AnalysisWidget)
self.Measure_From_Baseline1_Button.setGeometry(130, 220, 120, 21)
self.Measure_From_Baseline1_Button.setText( "Measure from bsl1")
self.Measure_From_Zero_Button = QtGui.QCheckBox(self.AnalysisWidget)
self.Measure_From_Zero_Button.setGeometry(130, 240, 120, 21)
self.Measure_From_Zero_Button.setText( "Measure from 0")
self.Measure_From_Zero_Button.setObjectName("Measure_From_Zero_Button")
self.Use_Spiketrains_Button = QtGui.QCheckBox(self.FilteringWidget)
self.Use_Spiketrains_Button.setGeometry(5, 100, 120, 21)
self.Use_Spiketrains_Button.setText( "Use SpikeTrains ?")
self.Create_Measure_Variables()
#Les titres des colonnes
self.label_begin = QtGui.QLabel(self.AnalysisWidget)
self.label_begin.setGeometry(135, 20, 35, 14)
self.label_begin.setText( "begin")
self.label_end = QtGui.QLabel(self.AnalysisWidget)
self.label_end.setGeometry(175, 20, 35, 14)
self.label_end.setText( "end")
self.label_length = QtGui.QLabel(self.AnalysisWidget)
self.label_length.setGeometry(210, 20, 35, 14)
self.label_length.setText( "length")
self.User_Defined_Measurement_Parameters = QtGui.QComboBox(self.AnalysisWidget)
self.User_Defined_Measurement_Parameters.setGeometry(250, 20, 80, 20)
self.User_Defined_Measurement_Parameters.addItems(self.List_of_User_Defined_Parameters)
self.Add_User_Defined_Measurement_Parameters_Button = QtGui.QPushButton(self.AnalysisWidget) #creation du bouton
self.Add_User_Defined_Measurement_Parameters_Button.setGeometry(335, 20, 15, 14) #taille et position (X,Y,Xsize,Ysize)
self.Add_User_Defined_Measurement_Parameters_Button.setText("+")
self.Remove_User_Defined_Measurement_Parameters_Button = QtGui.QPushButton(self.AnalysisWidget) #creation du bouton
self.Remove_User_Defined_Measurement_Parameters_Button.setGeometry(350, 20, 15, 14) #taille et position (X,Y,Xsize,Ysize)
self.Remove_User_Defined_Measurement_Parameters_Button.setText("-")
self.Set_User_Defined_Measurement_Parameters_to_Zero_Button = QtGui.QPushButton(self.AnalysisWidget) #creation du bouton
self.Set_User_Defined_Measurement_Parameters_to_Zero_Button.setGeometry(365, 20, 15, 14) #taille et position (X,Y,Xsize,Ysize)
self.Set_User_Defined_Measurement_Parameters_to_Zero_Button.setText("0")
#Tous les labels des champs de mesure
Button_Labels=["Bsln1","Peak1","Bsln2","Peak2","Bsln3","Peak3"]
for j in range(len(Button_Labels)):
eval(compile("self."+Button_Labels[j]+"= QtGui.QLabel(self.AnalysisWidget)",'<string>','exec'))
eval(compile("self."+Button_Labels[j]+".setGeometry(90, 45+20*j, 45, 14)",'<string>','exec'))
eval(compile("self."+Button_Labels[j]+".setText(Button_Labels[j])",'<string>','exec'))
#Tous les champs de mesure
Button_Names=[ ["Baseline1_begin","Peak1_begin","Baseline2_begin","Peak2_begin","Baseline3_begin","Peak3_begin"],
["Baseline1_end","Peak1_end","Baseline2_end","Peak2_end","Baseline3_end","Peak3_end"],
["Baseline1_size","Peak1_size","Baseline2_size","Peak2_size","Baseline3_size","Peak3_size"]]
for i in range(len(Button_Names)):
for j in range(len(Button_Names[i])):
eval(compile("self."+Button_Names[i][j]+"= QtGui.QLineEdit(self.AnalysisWidget)",'<string>','exec'))
eval(compile("self."+Button_Names[i][j]+".setGeometry(130+i*40, 40+20*j, 40, 22)",'<string>','exec'))
eval(compile("self."+Button_Names[i][j]+".setText(str(self.measurecoord[Button_Names[i][j]]))",'<string>','exec'))
eval(compile("self."+Button_Names[i][j]+".setPlaceholderText('in ms')",'<string>','exec'))
self.PositiveOrNegativeMeasure = QtGui.QCheckBox(self.AnalysisWidget)
self.PositiveOrNegativeMeasure.setGeometry(90, 165, 105, 14)
self.PositiveOrNegativeMeasure.setText( "Negative Current")
self.PositiveOrNegativeMeasure.setCheckState(2)
Mapping.CM.Types_of_Events_to_Measure='Negative'
#Affichage du sweep en cours
self.Sweep_Number_Label = QtGui.QLabel(self.NavigationWidget)
self.Sweep_Number_Label.setGeometry(90, 20, 50, 22)
self.Sweep_Number_Label.setText("Sweep")
self.Sweep_Number_Input_Field = QtGui.QLineEdit(self.NavigationWidget)
self.Sweep_Number_Input_Field.setGeometry(130, 20, 40, 22)
self.Sweep_Number_Input_Field.setText("0")
#Methode de calcul
#La variable de methode d'analyse en cours :
Analysis_Mode=["Baseline1_meth","Peak1_meth","Baseline2_meth","Peak2_meth","Baseline3_meth","Peak3_meth"]
for j in range(len(Analysis_Mode)):
eval(compile("self."+Analysis_Mode[j]+"= QtGui.QComboBox(self.AnalysisWidget)",'<string>','exec'))
eval(compile("self."+Analysis_Mode[j]+".setGeometry(250, 40+20*j, 80, 22)",'<string>','exec'))
eval(compile("self."+Analysis_Mode[j]+".addItems(['Min','Max'])",'<string>','exec'))
#Creation du Widget d'affichage
# self.displaying = QtGui.QDockWidget(self.MainWindow)
# self.MainWindow.addDockWidget(8, self.displaying) #8 est la position; cf documentation
self.IPythonOpened=False
self.Show_Main_Figure()
#la barre de navigation
self.slider = QtGui.QSlider(QtCore.Qt.Horizontal,self.NavigationWidget)
self.slider.setGeometry(5, 100, 150, 23)
self.slider.setRange(0, 1)
self.slider.setValue(0.5)
self.slider.setTracking(True)
#Barre de Status
self.status_text = QtGui.QLabel("Welcome in SynaptiQs")
self.MainWindow.statusBar().addWidget(self.status_text, 1)
#Barre de progression
self.progress = QtGui.QProgressBar(self.NavigationWidget)
self.progress.setGeometry(50, 170, 150, 23)
#Connexion des boutons de navigation avec leur signal
#Les Signaux d'appels des sweeps
QtCore.QObject.connect(self.Filter_Date, QtCore.SIGNAL('activated(int)'),Requete.Request_ComboBoxes_update)
QtCore.QObject.connect(self.Filter_BlockId, QtCore.SIGNAL('activated(int)'),Requete.Request_ComboBoxes_update)
QtCore.QObject.connect(self.Filter_BlockInfo, QtCore.SIGNAL('activated(int)'),Requete.Request_ComboBoxes_update)
QtCore.QObject.connect(self.Filter_ChannelName, QtCore.SIGNAL('activated(int)'),Requete.Request_ComboBoxes_update)
QtCore.QObject.connect(self.Filter_ChannelNumber, QtCore.SIGNAL('activated(int)'),Requete.Request_ComboBoxes_update)
QtCore.QObject.connect(self.Filter_NeuronName, QtCore.SIGNAL('activated(int)'),Requete.Request_ComboBoxes_update)
#Les signaux de Navigation
QtCore.QObject.connect(self.Previous, QtCore.SIGNAL("clicked()"),Navigate.Display_Previous_Trace) #Signal_Widget, Signal, Slot_Widget, Slot
QtCore.QObject.connect(self.Next, QtCore.SIGNAL("clicked()"),Navigate.Display_Next_Trace)
QtCore.QObject.connect(self.GetData, QtCore.SIGNAL("clicked()"),Requete.Final_Request)
QtCore.QObject.connect(self.Personalize, QtCore.SIGNAL("clicked()"),Requete.Personalize_Request)
QtCore.QObject.connect(self.Post_Filtering_Button, QtCore.SIGNAL("clicked()"),Requete.Post_Filtering_Widget)#Requete.Post_Filtering_Widget)
QtCore.QObject.connect(self.Minus_Step, QtCore.SIGNAL("clicked()"),Navigate.Display_Trace_minus_Step) #Signal_Widget, Signal, Slot_Widget, Slot
QtCore.QObject.connect(self.Plus_Step, QtCore.SIGNAL("clicked()"),Navigate.Display_Trace_plus_Step) #Signal_Widget, Signal, Slot_Widget, Slot
QtCore.QObject.connect(self.Reset_Fields, QtCore.SIGNAL("clicked()"),Requete.Resetfields) #Signal_Widget, Signal, Slot_Widget, Slot
QtCore.QObject.connect(self.SaveData, QtCore.SIGNAL("clicked()"),Requete.Save_Tags_To_Db)
QtCore.QObject.connect(self.LoadTags, QtCore.SIGNAL("clicked()"),Analysis.Load_Tags)
QtCore.QObject.connect(self.SaveTrace, QtCore.SIGNAL("clicked()"),self.Save_Trace)
QtCore.QObject.connect(self.Send_To_Igor, QtCore.SIGNAL("clicked()"),Infos.SendToIgor)
QtCore.QObject.connect(self.FirstSweep, QtCore.SIGNAL("clicked()"),Navigate.Display_First_Trace)
QtCore.QObject.connect(self.LastSweep, QtCore.SIGNAL("clicked()"),Navigate.Display_Last_Trace)
QtCore.QObject.connect(self.TagAll, QtCore.SIGNAL("clicked()"),Navigate.Tag_All_Traces)
QtCore.QObject.connect(self.UnTagAll, QtCore.SIGNAL("clicked()"),Navigate.UnTag_All_Traces)
QtCore.QObject.connect(self.Invert, QtCore.SIGNAL("clicked()"),Navigate.Invert_All_Tag_Values)
QtCore.QObject.connect(self.Sweep_Number_Input_Field, QtCore.SIGNAL('editingFinished ()'),Navigate.Load_This_Sweep_Number)
QtCore.QObject.connect(self.From, QtCore.SIGNAL('editingFinished ()'),Navigate.Check_From_To)
QtCore.QObject.connect(self.To, QtCore.SIGNAL('editingFinished ()'),Navigate.Check_From_To)
QtCore.QObject.connect(self.SQLight_File_Select_Window, QtCore.SIGNAL("clicked()"),Requete.Change_SQL_File)
QtCore.QObject.connect(self.Delete_Current_Segment_Button, QtCore.SIGNAL("clicked()"),Infos.Delete_Current_Segment)
QtCore.QObject.connect(self.Correspondance_info, QtCore.SIGNAL("clicked()"),Mapping.Correspondance)
# QtCore.QObject.connect(self.Current_or_Average, QtCore.SIGNAL('activated(int)'),Infos.List_All_Globals)
#Les signaux d'analyses globales
averageaction = lambda: Analysis.Measure_on_Average(Display_Superimposed_Traces=True)
QtCore.QObject.connect(self.Average, QtCore.SIGNAL("clicked()"),averageaction)
QtCore.QObject.connect(self.Superimpose, QtCore.SIGNAL("clicked()"),Analysis.Display_Superimposed_Traces)
QtCore.QObject.connect(self.Rasterplot, QtCore.SIGNAL("clicked()"),Analysis.Raster_Plot)
QtCore.QObject.connect(self.Start_Spike_Sorting, QtCore.SIGNAL("clicked()"),Infos.SpikeSorting)
QtCore.QObject.connect(self.ShowEvents, QtCore.SIGNAL("clicked()"),Analysis.Display_Events)
QtCore.QObject.connect(self.Show_Scalogram_Button, QtCore.SIGNAL("clicked()"),Analysis.EmbeddedScalogram)
QtCore.QObject.connect(self.Show_Concatenated_Scalogram_Button, QtCore.SIGNAL("clicked()"),Analysis.Concat_Scalogram)
#QtCore.QObject.connect(self.ShowEventsOptions, QtCore.SIGNAL("customContextMenuRequested ()"),Analysis.ShowEventsOptions)
#QtCore.QObject.connect(self.CallSpikes, QtCore.SIGNAL("clicked()"),Requete.Call_Spikes)
QtCore.QObject.connect(self.Measure_Button, QtCore.SIGNAL("clicked()"),Analysis.Measure)
QtCore.QObject.connect(self.Checkup, QtCore.SIGNAL("clicked()"),Analysis.Manip_Check_up)
QtCore.QObject.connect(self.inf, QtCore.SIGNAL("clicked()"),Analysis.Display_Infos)
QtCore.QObject.connect(self.Tagging_Tools, QtCore.SIGNAL("clicked()"),Infos.Retag)
QtCore.QObject.connect(self.ShellButton, QtCore.SIGNAL("clicked()"),self.EmbeddedIpython)
QtCore.QObject.connect(self.SendToSQl, QtCore.SIGNAL("clicked()"),Infos.SendToSQl)
#Les signaux de mesure d'amplitude
QtCore.QObject.connect(self.Baseline1_begin, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Peak1_begin, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Baseline2_begin, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Peak2_begin, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Baseline3_begin, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Peak3_begin, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Baseline1_end, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Peak1_end, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Baseline2_end, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Peak2_end, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Baseline3_end, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Peak3_end, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Baseline1_size, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Peak1_size, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Baseline2_size, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Peak2_size, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Baseline2_size, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.Peak3_size, QtCore.SIGNAL('editingFinished ()'),Analysis.Check_Measuring_Parameters_Validity)
QtCore.QObject.connect(self.PositiveOrNegativeMeasure, QtCore.SIGNAL('stateChanged(int)'),self.UpdatePositiveOrNegative)
QtCore.QObject.connect(self.User_Defined_Measurement_Parameters, QtCore.SIGNAL('activated(int)'),Analysis.Load_User_Defined_Parameters)
QtCore.QObject.connect(self.Add_User_Defined_Measurement_Parameters_Button, QtCore.SIGNAL("clicked()"),Analysis.Add_User_Defined_Measurement_Parameters)
QtCore.QObject.connect(self.Remove_User_Defined_Measurement_Parameters_Button, QtCore.SIGNAL("clicked()"),Analysis.Remove_User_Defined_Measurement_Parameters)
QtCore.QObject.connect(self.Set_User_Defined_Measurement_Parameters_to_Zero_Button, QtCore.SIGNAL("clicked()"),Analysis.Set_User_Defined_Measurement_Parameters_to_Zero)
QtCore.QObject.connect(self.slider, QtCore.SIGNAL('valueChanged(int)'), Navigate.Update_SweepNumber_Slider)
QtCore.QObject.connect(self.Tagging_Button, QtCore.SIGNAL("stateChanged(int)"),Navigate.Change_Tag_Checkbox_State)
QtCore.QObject.connect(self.Display_Measures_Button, QtCore.SIGNAL("stateChanged(int)"),Analysis.Measure_On_Off_Activated)
QtCore.QObject.connect(self.Analyze_Filtered_Traces_Button, QtCore.SIGNAL("stateChanged(int)"),Analysis.Measure_On_Off_Activated)
QtCore.QObject.connect(self.Measure_From_Baseline1_Button, QtCore.SIGNAL("stateChanged(int)"),Analysis.Measure_On_Off_Activated)
QtCore.QObject.connect(self.Measure_From_Zero_Button, QtCore.SIGNAL("stateChanged(int)"),Analysis.Measure_On_Off_Activated)
QtCore.QObject.connect(self.Display_Spikes_Button, QtCore.SIGNAL("stateChanged(int)"),Analysis.Measure_On_Off_Activated)
QtCore.QObject.connect(self.Display_Charge_Button, QtCore.SIGNAL("stateChanged(int)"),Analysis.Measure_On_Off_Activated)
QtCore.QObject.connect(self.Remove_Leak_Button, QtCore.SIGNAL("stateChanged(int)"),Analysis.Measure_On_Off_Activated)
QtCore.QObject.connect(self.Use_Spiketrains_Button, QtCore.SIGNAL("stateChanged(int)"),Requete.Activate_Spiketrains)
QtCore.QObject.connect(self.SQLTabWidget, QtCore.SIGNAL('currentChanged(int)'),Requete.SetDBcall)
QtCore.QObject.connect(self.SQLite_path, QtCore.SIGNAL('editingFinished ()'),Requete.Request_ComboBoxes_update)
QtCore.QObject.connect(self.User, QtCore.SIGNAL('editingFinished ()'),Requete.Record_User_Parameters)
QtCore.QObject.connect(self.Password, QtCore.SIGNAL('editingFinished ()'),Requete.Record_User_Parameters)
QtCore.QObject.connect(self.DBname, QtCore.SIGNAL('editingFinished ()'),Requete.Record_User_Parameters)
QtCore.QObject.connect(self.IPAdress, QtCore.SIGNAL('editingFinished ()'),Requete.Record_User_Parameters)
QtCore.QObject.connect(self.SQLite_path, QtCore.SIGNAL('editingFinished ()'),Requete.Record_User_Parameters)
QtCore.QObject.connect(self.Filtered_Display, QtCore.SIGNAL("stateChanged(int)"),Navigate.Load_This_Sweep_Number)
QtCore.QObject.connect(self.SQLTabWidget, QtCore.SIGNAL("currentChanged(int)"),Requete.Adjust_Authorized_Functions)
self.Superimpose_Used_Traces=False
self.AnalysisWidget.setEnabled(False)
self.SpikesWidget.setEnabled(False)
self.NavigationWidget.setEnabled(False)
self.MappingWidget.setEnabled(False)
self.LoadedList=[]
if os.path.isfile(self.param_inf[0]) == True:
self.SQLTabWidget.setCurrentIndex(0) ## mettre ici la derniere condition en memoire
else:
try:
self.SQLTabWidget.setCurrentIndex(0)
except:
msgBox = QtGui.QMessageBox()
msgBox.setText(
"""
<b>SynaptiQs was unable to open SQLite or MySQL db.</b>
<p>Please correct the path and Restart SynaptiQs.
""")
msgBox.exec_()
def Create_Measure_Variables(self):
#Les outils de mesure d'amplitude (Calcul de 3 pics)
#Le dictionnaire contenant les valeurs
try:
liste = [("Baseline1_begin",float(self.param_inf[10])),