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Python issues compiling in Linux #32

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M3-Coordinator opened this issue Jan 7, 2021 · 5 comments
Open

Python issues compiling in Linux #32

M3-Coordinator opened this issue Jan 7, 2021 · 5 comments
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@M3-Coordinator
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I am getting errors when compiling on Ubuntu 20.04 concerning Python.h not found for behaviortracker and behaviortrackerworker.
Some sleuthing around the web leads me to believe that I am missing some python libraries.
I have python3-dev and numpy installed. Does behaviortracker require additional python libraries?
@daharoni
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daharoni commented Jan 7, 2021

Hmm, interesting. The behaviortracker code just requires Python to be embedded. For Windows this just meant I needed to include:

INCLUDEPATH += C:/Users/dbaha/.conda/envs/basepy37/include
LIBS += -LC:/Users/dbaha/.conda/envs/basepy37/libs -lpython37

and
INCLUDEPATH += C:/Users/dbaha/.conda/envs/basepy37/Lib/site-packages/numpy/core/include
in the .pro file. It shouldn't require anything else.

The only other issue I had run into, but this has to do with actually running Python code within the software, is your numpy install must include a .libs folder which contains an important .dll file. This folder doesn't always show up when installing numpy through conda but does seem to always show up when using pip install.

@dysonsphere-startmail
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Hmm, OK. so I definitely have python installed:
kdys@serval-pop-os:~$ python3 --version Python 3.8.5

but for another application I had to set a symbolic link from "python" to direct to "python2" so:
kdys@serval-pop-os:~$ python --version Python 2.7.18

Maybe that is an issue as the path to python leads to the 2.7 location?

Also, I have numpy installed via pip3:
kdys@serval-pop-os:~$ pip3 install numpy Requirement already satisfied: numpy in /usr/lib/python3/dist-packages (1.17.4)

I may have to direct the Qt .pro file to the correct python locations.
I tried by adding:

INCLUDEPATH += /usr/lib/python3/include
LIBS += -L/usr/lib/python3.8 -python3.8
INCLUDEPATH += /usr/lib/python3/dist-packages/numpy/core/include

with those directories holding the following files:

kdys@serval-pop-os:/usr/lib/python3/dist-packages/numpy/core/include/numpy$ ls -alh
total 396K
drwxr-xr-x 3 root root 4.0K Nov 16 15:47 .
drwxr-xr-x 3 root root 4.0K Nov 16 15:47 ..
-rw-r--r-- 1 root root  164 Jun 15  2019 arrayobject.h
-rw-r--r-- 1 root root 3.5K Jun 15  2019 arrayscalars.h
-rw-r--r-- 1 root root 1.9K Aug 30  2019 halffloat.h
-rw-r--r-- 1 root root  60K Feb 18  2020 __multiarray_api.h
-rw-r--r-- 1 root root  56K Feb 18  2020 multiarray_api.txt
-rw-r--r-- 1 root root  12K Oct 15  2019 ndarrayobject.h
-rw-r--r-- 1 root root  64K Nov  8  2019 ndarraytypes.h
-rw-r--r-- 1 root root 1.9K Jun 15  2019 _neighborhood_iterator_imp.h
-rw-r--r-- 1 root root 6.7K Aug 30  2019 noprefix.h
-rw-r--r-- 1 root root 4.7K Aug 30  2019 npy_1_7_deprecated_api.h
-rw-r--r-- 1 root root  15K Aug 30  2019 npy_3kcompat.h
-rw-r--r-- 1 root root  38K Nov  8  2019 npy_common.h
-rw-r--r-- 1 root root 3.8K Aug 30  2019 npy_cpu.h
-rw-r--r-- 1 root root 2.6K Aug 30  2019 npy_endian.h
-rw-r--r-- 1 root root 3.4K Aug 30  2019 npy_interrupt.h
-rw-r--r-- 1 root root  21K Nov  8  2019 npy_math.h
-rw-r--r-- 1 root root  567 Jun 15  2019 npy_no_deprecated_api.h
-rw-r--r-- 1 root root  817 Jun 15  2019 npy_os.h
-rw-r--r-- 1 root root 1010 Feb 18  2020 _numpyconfig.h
-rw-r--r-- 1 root root 1.2K Aug 30  2019 numpyconfig.h
-rw-r--r-- 1 root root 6.2K Jun 15  2019 old_defines.h
-rw-r--r-- 1 root root  708 Aug 30  2019 oldnumeric.h
drwxr-xr-x 2 root root 4.0K Nov 16 15:47 random
-rw-r--r-- 1 root root  12K Feb 18  2020 __ufunc_api.h
-rw-r--r-- 1 root root 6.8K Feb 18  2020 ufunc_api.txt
-rw-r--r-- 1 root root  13K Nov  8  2019 ufuncobject.h
-rw-r--r-- 1 root root  729 Aug 30  2019 utils.h

kdys@serval-pop-os:/usr/lib/python3.8$ ls -lah
total 4.8M
drwxr-xr-x  31 root root  20K Nov 16 15:47 .
drwxr-xr-x 154 root root  12K Jan  7 15:38 ..
-rw-r--r--   1 root root 4.4K Jul 28 08:59 abc.py
-rw-r--r--   1 root root  33K Jul 28 08:59 aifc.py
-rw-r--r--   1 root root  477 Jul 28 08:59 antigravity.py
-rw-r--r--   1 root root  95K Jul 28 08:59 argparse.py
-rw-r--r--   1 root root  19K Jul 28 08:59 ast.py
-rw-r--r--   1 root root  12K Jul 28 08:59 asynchat.py
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 asyncio
-rw-r--r--   1 root root  20K Jul 28 08:59 asyncore.py
-rwxr-xr-x   1 root root  20K Jul 28 08:59 base64.py
-rw-r--r--   1 root root  32K Jul 28 08:59 bdb.py
-rw-r--r--   1 root root  14K Jul 28 08:59 binhex.py
-rw-r--r--   1 root root 2.2K Jul 28 08:59 bisect.py
-rw-r--r--   1 root root 1.8K Jul 28 08:59 _bootlocale.py
-rw-r--r--   1 root root  13K Jul 28 08:59 bz2.py
-rw-r--r--   1 root root  25K Jul 28 08:59 calendar.py
-rwxr-xr-x   1 root root  33K Jul 28 08:59 cgi.py
-rw-r--r--   1 root root  12K Jul 28 08:59 cgitb.py
-rw-r--r--   1 root root 5.4K Jul 28 08:59 chunk.py
-rw-r--r--   1 root root  15K Jul 28 08:59 cmd.py
-rw-r--r--   1 root root  36K Jul 28 08:59 codecs.py
-rw-r--r--   1 root root 6.2K Jul 28 08:59 codeop.py
-rw-r--r--   1 root root  11K Jul 28 08:59 code.py
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 collections
-rw-r--r--   1 root root  26K Jul 28 08:59 _collections_abc.py
-rw-r--r--   1 root root 4.0K Jul 28 08:59 colorsys.py
-rw-r--r--   1 root root 8.6K Jul 28 08:59 _compat_pickle.py
-rw-r--r--   1 root root  14K Jul 28 08:59 compileall.py
-rw-r--r--   1 root root 5.3K Jul 28 08:59 _compression.py
drwxr-xr-x   4 root root 4.0K Nov 16 14:38 concurrent
drwxr-xr-x   2 root root 4.0K Nov 17 15:39 config-3.8-x86_64-linux-gnu
-rw-r--r--   1 root root  54K Jul 28 08:59 configparser.py
-rw-r--r--   1 root root  25K Jul 28 08:59 contextlib.py
-rw-r--r--   1 root root  129 Jul 28 08:59 contextvars.py
-rw-r--r--   1 root root 8.5K Jul 28 08:59 copy.py
-rw-r--r--   1 root root 7.0K Jul 28 08:59 copyreg.py
-rwxr-xr-x   1 root root 6.5K Jul 28 08:59 cProfile.py
-rw-r--r--   1 root root 3.6K Jul 28 08:59 crypt.py
-rw-r--r--   1 root root  16K Jul 28 08:59 csv.py
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 ctypes
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 curses
-rw-r--r--   1 root root  49K Jul 28 08:59 dataclasses.py
-rw-r--r--   1 root root  87K Jul 28 08:59 datetime.py
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 dbm
-rw-r--r--   1 root root  320 Jul 28 08:59 decimal.py
-rw-r--r--   1 root root  83K Jul 28 08:59 difflib.py
-rw-r--r--   1 root root  21K Jul 28 08:59 dis.py
drwxr-xr-x   4 root root 4.0K Nov 16 14:38 distutils
-rw-r--r--   1 root root 103K Jul 28 08:59 doctest.py
-rw-r--r--   1 root root 2.8K Jul 28 08:59 dummy_threading.py
-rw-r--r--   1 root root 5.9K Jul 28 08:59 _dummy_thread.py
drwxr-xr-x   4 root root 4.0K Nov 16 14:38 email
drwxr-xr-x   3 root root  16K Nov 16 14:38 encodings
-rw-r--r--   1 root root  35K Jul 28 08:59 enum.py
-rw-r--r--   1 root root 9.6K Jul 28 08:59 filecmp.py
-rw-r--r--   1 root root  15K Jul 28 08:59 fileinput.py
-rw-r--r--   1 root root 4.0K Jul 28 08:59 fnmatch.py
-rw-r--r--   1 root root  15K Jul 28 08:59 formatter.py
-rw-r--r--   1 root root  24K Jul 28 08:59 fractions.py
-rw-r--r--   1 root root  34K Jul 28 08:59 ftplib.py
-rw-r--r--   1 root root  37K Jul 28 08:59 functools.py
-rw-r--r--   1 root root 5.0K Jul 28 08:59 __future__.py
-rw-r--r--   1 root root 4.9K Jul 28 08:59 genericpath.py
-rw-r--r--   1 root root 7.4K Jul 28 08:59 getopt.py
-rw-r--r--   1 root root 5.9K Jul 28 08:59 getpass.py
-rw-r--r--   1 root root  27K Jul 28 08:59 gettext.py
-rw-r--r--   1 root root 5.6K Jul 28 08:59 glob.py
-rw-r--r--   1 root root  21K Jul 28 08:59 gzip.py
-rw-r--r--   1 root root 9.6K Jul 28 08:59 hashlib.py
-rw-r--r--   1 root root  23K Jul 28 08:59 heapq.py
-rw-r--r--   1 root root 6.5K Jul 28 08:59 hmac.py
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 html
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 http
-rw-r--r--   1 root root  53K Jul 28 08:59 imaplib.py
-rw-r--r--   1 root root 3.8K Jul 28 08:59 imghdr.py
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 importlib
-rw-r--r--   1 root root  11K Jul 28 08:59 imp.py
-rw-r--r--   1 root root 116K Jul 28 08:59 inspect.py
-rw-r--r--   1 root root 3.5K Jul 28 08:59 io.py
-rw-r--r--   1 root root  70K Jul 28 08:59 ipaddress.py
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 json
-rw-r--r--   1 root root  945 Jul 28 08:59 keyword.py
drwxr-xr-x   5 root root 4.0K Nov 16 14:43 lib2to3
drwxr-xr-x   2 root root  12K Nov 16 15:47 lib-dynload
-rw-r--r--   1 root root  13K Jul 28 08:59 LICENSE.txt
-rw-r--r--   1 root root 5.3K Jul 28 08:59 linecache.py
-rw-r--r--   1 root root  77K Jul 28 08:59 locale.py
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 logging
-rw-r--r--   1 root root  13K Jul 28 08:59 lzma.py
-rw-r--r--   1 root root  77K Jul 28 08:59 mailbox.py
-rw-r--r--   1 root root 8.0K Jul 28 08:59 mailcap.py
-rw-r--r--   1 root root  15K Jul 28 08:59 _markupbase.py
-rw-r--r--   1 root root  22K Jul 28 08:59 mimetypes.py
-rw-r--r--   1 root root  24K Jul 28 08:59 modulefinder.py
drwxr-xr-x   4 root root 4.0K Nov 16 14:38 multiprocessing
-rw-r--r--   1 root root 5.5K Jul 28 08:59 netrc.py
-rw-r--r--   1 root root  43K Jul 28 08:59 nntplib.py
-rw-r--r--   1 root root  28K Jul 28 08:59 ntpath.py
-rw-r--r--   1 root root 2.6K Jul 28 08:59 nturl2path.py
-rw-r--r--   1 root root  11K Jul 28 08:59 numbers.py
-rw-r--r--   1 root root 5.7K Jul 28 08:59 opcode.py
-rw-r--r--   1 root root  11K Jul 28 08:59 operator.py
-rw-r--r--   1 root root  59K Jul 28 08:59 optparse.py
-rw-r--r--   1 root root  39K Jul 28 08:59 os.py
-rw-r--r--   1 root root  20K Jul 28 08:59 _osx_support.py
-rw-r--r--   1 root root  51K Jul 28 08:59 pathlib.py
-rwxr-xr-x   1 root root  62K Jul 28 08:59 pdb.py
-rw-r--r--   1 root root   64 Jul 28 08:59 __phello__.foo.py
-rw-r--r--   1 root root  63K Jul 28 08:59 pickle.py
-rw-r--r--   1 root root  92K Jul 28 08:59 pickletools.py
-rw-r--r--   1 root root 8.8K Jul 28 08:59 pipes.py
-rw-r--r--   1 root root  21K Jul 28 08:59 pkgutil.py
-rwxr-xr-x   1 root root  40K Jul 28 08:59 platform.py
-rw-r--r--   1 root root  31K Jul 28 08:59 plistlib.py
-rw-r--r--   1 root root  15K Jul 28 08:59 poplib.py
-rw-r--r--   1 root root  16K Jul 28 08:59 posixpath.py
-rw-r--r--   1 root root  21K Jul 28 08:59 pprint.py
-rwxr-xr-x   1 root root  23K Jul 28 08:59 profile.py
-rw-r--r--   1 root root  27K Jul 28 08:59 pstats.py
-rw-r--r--   1 root root 4.7K Jul 28 08:59 pty.py
-rw-r--r--   1 root root 6.1K Jul 28 08:59 _py_abc.py
drwxr-xr-x   2 root root  12K Nov 16 14:38 __pycache__
-rw-r--r--   1 root root  15K Jul 28 08:59 pyclbr.py
-rw-r--r--   1 root root 8.1K Jul 28 08:59 py_compile.py
-rw-r--r--   1 root root 224K Jul 28 08:59 _pydecimal.py
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 pydoc_data
-rwxr-xr-x   1 root root 106K Jul 28 08:59 pydoc.py
-rw-r--r--   1 root root  91K Jul 28 08:59 _pyio.py
-rw-r--r--   1 root root  12K Jul 28 08:59 queue.py
-rwxr-xr-x   1 root root 7.1K Jul 28 08:59 quopri.py
-rw-r--r--   1 root root  29K Jul 28 08:59 random.py
-rw-r--r--   1 root root 5.2K Jul 28 08:59 reprlib.py
-rw-r--r--   1 root root  16K Jul 28 08:59 re.py
-rw-r--r--   1 root root 7.0K Jul 28 08:59 rlcompleter.py
-rw-r--r--   1 root root  12K Jul 28 08:59 runpy.py
-rw-r--r--   1 root root 6.3K Jul 28 08:59 sched.py
-rw-r--r--   1 root root 2.0K Jul 28 08:59 secrets.py
-rw-r--r--   1 root root  19K Jul 28 08:59 selectors.py
-rw-r--r--   1 root root 8.4K Jul 28 08:59 shelve.py
-rw-r--r--   1 root root  14K Jul 28 08:59 shlex.py
-rw-r--r--   1 root root  50K Jul 28 08:59 shutil.py
-rw-r--r--   1 root root 2.3K Jul 28 08:59 signal.py
-rw-r--r--   1 root root 3.1K Jul 28 08:59 _sitebuiltins.py
lrwxrwxrwx   1 root root   31 Jul 28 08:59 sitecustomize.py -> /etc/python3.8/sitecustomize.py
-rw-r--r--   1 root root  22K Jul 28 08:59 site.py
-rwxr-xr-x   1 root root  34K Jul 28 08:59 smtpd.py
-rwxr-xr-x   1 root root  44K Jul 28 08:59 smtplib.py
-rw-r--r--   1 root root 7.0K Jul 28 08:59 sndhdr.py
-rw-r--r--   1 root root  35K Jul 28 08:59 socket.py
-rw-r--r--   1 root root  27K Jul 28 08:59 socketserver.py
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 sqlite3
-rw-r--r--   1 root root  27K Jul 28 08:59 sre_compile.py
-rw-r--r--   1 root root 7.0K Jul 28 08:59 sre_constants.py
-rw-r--r--   1 root root  40K Jul 28 08:59 sre_parse.py
-rw-r--r--   1 root root  50K Jul 28 08:59 ssl.py
-rw-r--r--   1 root root  39K Jul 28 08:59 statistics.py
-rw-r--r--   1 root root 5.4K Jul 28 08:59 stat.py
-rw-r--r--   1 root root  13K Jul 28 08:59 stringprep.py
-rw-r--r--   1 root root  11K Jul 28 08:59 string.py
-rw-r--r--   1 root root  25K Jul 28 08:59 _strptime.py
-rw-r--r--   1 root root  257 Jul 28 08:59 struct.py
-rw-r--r--   1 root root  76K Jul 28 08:59 subprocess.py
-rw-r--r--   1 root root  18K Jul 28 08:59 sunau.py
-rw-r--r--   1 root root 2.1K Jul 28 08:59 symbol.py
-rw-r--r--   1 root root 7.4K Jul 28 08:59 symtable.py
lrwxrwxrwx   1 root root   35 Jul 28 08:59 _sysconfigdata__linux_x86_64-linux-gnu.py -> _sysconfigdata__x86_64-linux-gnu.py
-rw-r--r--   1 root root  26K Jul 28 08:59 _sysconfigdata__x86_64-linux-gnu.py
-rw-r--r--   1 root root  25K Jul 28 08:59 sysconfig.py
-rwxr-xr-x   1 root root  12K Jul 28 08:59 tabnanny.py
-rwxr-xr-x   1 root root  92K Jul 28 08:59 tarfile.py
-rw-r--r--   1 root root  23K Jul 28 08:59 telnetlib.py
-rw-r--r--   1 root root  32K Jul 28 08:59 tempfile.py
drwxr-xr-x   5 root root 4.0K Nov 16 14:38 test
-rw-r--r--   1 root root  19K Jul 28 08:59 textwrap.py
-rw-r--r--   1 root root 1003 Jul 28 08:59 this.py
-rw-r--r--   1 root root 7.1K Jul 28 08:59 _threading_local.py
-rw-r--r--   1 root root  50K Jul 28 08:59 threading.py
-rwxr-xr-x   1 root root  14K Jul 28 08:59 timeit.py
drwxr-xr-x   3 root root 4.0K Nov 16 15:47 tkinter
-rw-r--r--   1 root root  26K Jul 28 08:59 tokenize.py
-rw-r--r--   1 root root 2.4K Jul 28 08:59 token.py
-rw-r--r--   1 root root  23K Jul 28 08:59 traceback.py
-rw-r--r--   1 root root  17K Jul 28 08:59 tracemalloc.py
-rwxr-xr-x   1 root root  30K Jul 28 08:59 trace.py
-rw-r--r--   1 root root  879 Jul 28 08:59 tty.py
-rw-r--r--   1 root root 141K Jul 28 08:59 turtle.py
-rw-r--r--   1 root root 9.5K Jul 28 08:59 types.py
-rw-r--r--   1 root root  68K Jul 28 08:59 typing.py
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 unittest
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 urllib
-rw-r--r--   1 root root  30K Jul 28 08:59 uuid.py
-rwxr-xr-x   1 root root 6.8K Jul 28 08:59 uu.py
drwxr-xr-x   4 root root 4.0K Nov 16 14:38 venv
-rw-r--r--   1 root root  20K Jul 28 08:59 warnings.py
-rw-r--r--   1 root root  18K Jul 28 08:59 wave.py
-rw-r--r--   1 root root  21K Jul 28 08:59 weakref.py
-rw-r--r--   1 root root 5.7K Jul 28 08:59 _weakrefset.py
-rwxr-xr-x   1 root root  24K Jul 28 08:59 webbrowser.py
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 wsgiref
-rw-r--r--   1 root root 5.8K Jul 28 08:59 xdrlib.py
drwxr-xr-x   7 root root 4.0K Nov 16 14:38 xml
drwxr-xr-x   3 root root 4.0K Nov 16 14:38 xmlrpc
-rw-r--r--   1 root root 7.4K Jul 28 08:59 zipapp.py
-rw-r--r--   1 root root  86K Jul 28 08:59 zipfile.py
-rw-r--r--   1 root root  31K Jul 28 08:59 zipimport.py

kdys@serval-pop-os:/usr/lib/python3/dist-packages/numpy/core$ ls -lah
total 4.4M
drwxr-xr-x  6 root root 4.0K Nov 16 15:47 .
drwxr-xr-x 16 root root 4.0K Nov 16 15:47 ..
-rw-r--r--  1 root root 197K Nov  8  2019 _add_newdocs.py
-rw-r--r--  1 root root    0 Nov  7  2019 _aliased_types.py
-rw-r--r--  1 root root  60K Nov  8  2019 arrayprint.py
-rw-r--r--  1 root root 9.8K Nov  8  2019 _asarray.py
-rw-r--r--  1 root root  413 Jun 15  2019 cversions.py
-rw-r--r--  1 root root  70K Nov  8  2019 defchararray.py
-rw-r--r--  1 root root 3.4K Nov  8  2019 _dtype_ctypes.py
-rw-r--r--  1 root root 9.5K Nov  7  2019 _dtype.py
-rw-r--r--  1 root root  15K Feb 18  2020 _dummy.cpython-38-x86_64-linux-gnu.so
-rw-r--r--  1 root root  51K Nov  8  2019 einsumfunc.py
-rw-r--r--  1 root root 4.5K Nov  8  2019 _exceptions.py
-rw-r--r--  1 root root 113K Nov  8  2019 fromnumeric.py
-rw-r--r--  1 root root  17K Nov  8  2019 function_base.py
-rw-r--r--  1 root root 7.3K Aug 30  2019 generate_numpy_api.py
-rw-r--r--  1 root root  19K Nov  8  2019 getlimits.py
drwxr-xr-x  3 root root 4.0K Nov 16 15:47 include
-rw-r--r--  1 root root 4.6K Nov  7  2019 info.py
-rw-r--r--  1 root root 4.7K Nov  8  2019 __init__.py
-rw-r--r--  1 root root  26K Nov  8  2019 _internal.py
drwxr-xr-x  3 root root 4.0K Nov 16 15:47 lib
-rw-r--r--  1 root root  11K Nov  8  2019 machar.py
-rw-r--r--  1 root root  12K Nov  8  2019 memmap.py
-rw-r--r--  1 root root 8.3K Nov  8  2019 _methods.py
-rw-r--r--  1 root root  52K Nov  8  2019 multiarray.py
-rw-r--r--  1 root root 114K Feb 18  2020 _multiarray_tests.cpython-38-x86_64-linux-gnu.so
-rw-r--r--  1 root root 3.2M Feb 18  2020 _multiarray_umath.cpython-38-x86_64-linux-gnu.so
-rw-r--r--  1 root root  71K Nov  8  2019 numeric.py
-rw-r--r--  1 root root  18K Nov  8  2019 numerictypes.py
-rw-r--r--  1 root root  15K Feb 18  2020 _operand_flag_tests.cpython-38-x86_64-linux-gnu.so
-rw-r--r--  1 root root 7.2K Nov  8  2019 overrides.py
drwxr-xr-x  2 root root 4.0K Nov 16 15:47 __pycache__
-rw-r--r--  1 root root  44K Feb 18  2020 _rational_tests.cpython-38-x86_64-linux-gnu.so
-rw-r--r--  1 root root  31K Nov  8  2019 records.py
-rw-r--r--  1 root root  18K Feb 18  2020 setup_common.py
-rw-r--r--  1 root root  42K Nov  8  2019 setup.py
-rw-r--r--  1 root root  29K Nov  8  2019 shape_base.py
-rw-r--r--  1 root root 2.8K Aug 30  2019 _string_helpers.py
-rw-r--r--  1 root root  15K Feb 18  2020 _struct_ufunc_tests.cpython-38-x86_64-linux-gnu.so
drwxr-xr-x  4 root root 4.0K Nov 16 15:47 tests
-rw-r--r--  1 root root 9.0K Aug 30  2019 _type_aliases.py
-rw-r--r--  1 root root  14K Nov  8  2019 _ufunc_config.py
-rw-r--r--  1 root root 1.9K Nov  8  2019 umath.py
-rw-r--r--  1 root root  27K Feb 18  2020 _umath_tests.cpython-38-x86_64-linux-gnu.so
-rw-r--r--  1 root root  455 Aug 30  2019 umath_tests.py

Still get the same errors:

/home/kdys/Apps/Miniscope-Qt/Miniscope-DAQ-QT-Software-1.10/source/behaviortrackerworker.h:17: error: Python.h: No such file or directory
In file included from ../source/behaviortrackerworker.cpp:1:
../source/behaviortrackerworker.h:17:11: fatal error: Python.h: No such file or directory
   17 |  #include <Python.h>
      |           ^~~~~~~~~~

@dysonsphere-startmail
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I have tried the INCLUDEPATH statements both inside and out of the win32 braces:

win32 {
    # Path to your openCV .lib file(s)
    LIBS += -LC:/opencv-4.4.0/build/lib/Release -lopencv_world440

#    LIBS += -LC:/opencv-4.4.0/build/lib/Debug -lopencv_world440d

    # Path to openCV header files
    INCLUDEPATH += C:/opencv-4.4.0/build/install/include
} else {
        CONFIG += link_pkgconfig
        PKGCONFIG += opencv4
    }

    # Do we need DEPENDPATH ????
#    #DEPENDPATH +=

    # For libusb
#    LIBS += -LC:/libusb-1.0.23/MS64/dll/ -llibusb-1.0
#    INCLUDEPATH += C:/libusb-1.0.23/include/libusb-1.0
    # For Python
    INCLUDEPATH += /usr/lib/python3/include
    LIBS += -L/usr/lib/python3.8 -python3.8
#   INCLUDEPATH += C:/Users/dbaha/.conda/envs/basepy37/include
#   LIBS += -LC:/Users/dbaha/.conda/envs/basepy37/libs -lpython37

#   For numpy
    INCLUDEPATH += /usr/lib/python3/dist-packages/numpy/core/include

If I comment out

 else {
        CONFIG += link_pkgconfig
        PKGCONFIG += opencv4
    }

Then I get missing opencv errors. So my guess is that for linux the path statements do not need system specific braces and should just be as I have them above.

The error is looking for Python.h. I don't see a file or directory of that name in any of the INCLUDEPATHs above. So this might be the issue then. Where is that file/directory in Windows?

@dysonsphere-startmail
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OK. I might have figured it out.
On my system Python.h is in /usr/include/python3.8
I edited the .pro code section to this:

win32 {
    # Path to your openCV .lib file(s)
    LIBS += -LC:/opencv-4.4.0/build/lib/Release -lopencv_world440

#    LIBS += -LC:/opencv-4.4.0/build/lib/Debug -lopencv_world440d

    # Path to openCV header files
    INCLUDEPATH += C:/opencv-4.4.0/build/install/include
} else {
        CONFIG += link_pkgconfig
        PKGCONFIG += opencv4
    }

    # Do we need DEPENDPATH ????
#    #DEPENDPATH +=

    # For libusb
#    LIBS += -LC:/libusb-1.0.23/MS64/dll/ -llibusb-1.0
#    INCLUDEPATH += C:/libusb-1.0.23/include/libusb-1.0
    # For Python
    INCLUDEPATH += /usr/include/python3.8
    INCLUDEPATH += /usr/lib/python3/include
    LIBS += -L/usr/lib/python3.8 -lpython3.8
#   INCLUDEPATH += C:/Users/dbaha/.conda/envs/basepy37/include
#   LIBS += -LC:/Users/dbaha/.conda/envs/basepy37/libs -lpython37

#   For numpy
    INCLUDEPATH += /usr/lib/python3/dist-packages/numpy/core/include

The program compiles without errors and I can launch the application.
I need to test it with miniscope and camera still, as I am at home without access to the equipment.
I will test it out on Monday.

@dysonsphere-startmail
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OK. So For some reason when I tried to load a config file the program crashed. So I tried re-compiling with debug. At which point I was unable to reproduce the build that I previously had.
After examining the .pro file I found that there is a difference in the code following:
# Move user and device configs to build directory
between 1.02 and 1.10
I changed the 1.10 code to be the same as 1.02 and, voila, a build!
I tested it with the config file for webcam only, using my laptop camera and it worked flawlessly!
I still need to test with v3 and v4 miniscopes (monday).
Here is the .pro file I used to compile for Linux:

QT += qml quick widgets
CONFIG += c++11

QT += 3dcore

# The following define makes your compiler emit warnings if you use
# any Qt feature that has been marked deprecated (the exact warnings
# depend on your compiler). Refer to the documentation for the
# deprecated API to know how to port your code away from it.
DEFINES += QT_DEPRECATED_WARNINGS

#DEFINES += DEBUG
#DEFINES += USE_USB
DEFINES += USE_PYTHON

# You can also make your code fail to compile if it uses deprecated APIs.
# In order to do so, uncomment the following line.
# You can also select to disable deprecated APIs only up to a certain version of Qt.
#DEFINES += QT_DISABLE_DEPRECATED_BEFORE=0x060000    # disables all the APIs deprecated before Qt 6.0.0

SOURCES += \
        backend.cpp \
        behaviorcam.cpp \
        behaviortracker.cpp \
        behaviortrackerworker.cpp \
        controlpanel.cpp \
        datasaver.cpp \
        main.cpp \
        miniscope.cpp \
        newquickview.cpp \
        tracedisplay.cpp \
        videodevice.cpp \
        videodisplay.cpp \
        videostreamocv.cpp

RESOURCES += qml.qrc

# Additional import path used to resolve QML modules in Qt Creator's code model
QML_IMPORT_PATH =

# Additional import path used to resolve QML modules just for Qt Quick Designer
QML_DESIGNER_IMPORT_PATH =

# Add Icon
RC_ICONS = miniscope_icon.ico

# Default rules for deployment.
qnx: target.path = /tmp/$${TARGET}/bin
else: unix:!android: target.path = /opt/$${TARGET}/bin
!isEmpty(target.path): INSTALLS += target

HEADERS += \
    backend.h \
    behaviorcam.h \
    behaviortracker.h \
    behaviortrackerworker.h \
    controlpanel.h \
    datasaver.h \
    miniscope.h \
    newquickview.h \
    tracedisplay.h \
    videodevice.h \
    videodisplay.h \
    videostreamocv.h

DISTFILES += \
    ../Python/DLCwrapper.py \
    ../Scripts/DLCwrapper.py \
    ../deviceConfigs/behaviorCams.json \
    ../deviceConfigs/miniscopes.json \
    ../deviceConfigs/userConfigProps.json \
    ../deviceConfigs/videoDevices.json


CONFIG += link_pkgconfig
PKGCONFIG += opencv4

# For Python
INCLUDEPATH += /usr/include/python3.8
LIBS += -L/usr/lib/python3.8 -lpython3.8

# For numpy
INCLUDEPATH += /usr/lib/python3/dist-packages/numpy/core/include


# Move user and device configs to build directory
copydata.commands = $(COPY_DIR) \"$$shell_path($$PWD\\..\\deviceConfigs)\" \"$$shell_path($$OUT_PWD\\deviceConfigs)\"
copydata2.commands = $(COPY_DIR) \"$$shell_path($$PWD\\..\\userConfigs)\" \"$$shell_path($$OUT_PWD\\userConfigs)\"
copydata3.commands = $(COPY_DIR) \"$$shell_path($$PWD\\..\\Scripts)\" \"$$shell_path($$OUT_PWD\\Scripts)\"
first.depends = $(first) copydata copydata2 copydata3
export(first.depends)
export(copydata.commands)
export(copydata2.commands)
export(copydata3.commands)

QMAKE_EXTRA_TARGETS += first copydata copydata2 copydata3

@phildong phildong mentioned this issue Jun 21, 2021
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@sneakers-the-rat sneakers-the-rat mentioned this issue Jul 20, 2023
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@sneakers-the-rat @daharoni @dysonsphere-startmail @M3-Coordinator