Width/Heigth mismatch

[big-charles]

Describe the bug
RootPainter seems to invert the width and heigth when loading the image. This causes in the getitem func of the torch dataset to crash Traceback (most recent call last): │nd,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found
File "trainer/main.py", line 33, in │,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,n
trainer.main_loop() │o seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no
File "/CECI/home/users/r/o/rongione/root_painter/trainer/trainer.py", line 105, in main_loop│seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no se
self.train_one_epoch() │g found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg
File "/CECI/home/users/r/o/rongione/root_painter/trainer/trainer.py", line 234, in train_one│found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg fo
_epoch │und,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg foun
for step, (photo_tiles, │d,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,
File "/home/ucl/elia/rongione/.local/lib/python3.8/site-packages/torch/utils/data/dataloader│no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no
.py", line 517, in next │ seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no s
data = self._next_data() │eg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg
File "/home/ucl/elia/rongione/.local/lib/python3.8/site-packages/torch/utils/data/dataloader│ found,no seg found,no seg found,load seg from file.
.py", line 1199, in _next_data │no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no
return self._process_data(data) │ seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no s
File "/home/ucl/elia/rongione/.local/lib/python3.8/site-packages/torch/utils/data/dataloader│eg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg
.py", line 1225, in _process_data │ found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg f
data.reraise() │ound,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg fou
File "/home/ucl/elia/rongione/.local/lib/python3.8/site-packages/torch/_utils.py", line 429,│nd,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found
in reraise │,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,n
raise self.exc_type(msg) │o seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no
AssertionError: Caught AssertionError in DataLoader worker process 0. │seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no se
Original Traceback (most recent call last): │g found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg
File "/home/ucl/elia/rongione/.local/lib/python3.8/site-packages/torch/utils/data/_utils/wor│found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg fo
ker.py", line 202, in _worker_loop │und,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg foun
data = fetcher.fetch(index) │d,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,
File "/home/ucl/elia/rongione/.local/lib/python3.8/site-packages/torch/utils/data/_utils/fet│no seg found,no seg found,no seg found,no seg found,no seg found,no seg found,load seg from f
ch.py", line 44, in fetch │ile.
data = [self.dataset[idx] for idx in possibly_batched_index] │Traceback (most recent call last):
File "/home/ucl/elia/rongione/.local/lib/python3.8/site-packages/torch/utils/data/_utils/fet│ File "/home/Charles/root_painter/painter/src/main/python/plot_seg_metrics.py", line 185, in
ch.py", line 44, in │ run
data = [self.dataset[idx] for idx in possibly_batched_index] │ metrics = compute_seg_metrics(self.seg_dir, self.annot_dir, fname)
File "/CECI/home/users/r/o/rongione/root_painter/trainer/datasets.py", line 138, in getite│ File "/home/Charles/root_painter/painter/src/main/python/plot_seg_metrics.py", line 141, in
m │ compute_seg_metrics
assert annot_tile.shape == (self.in_w, self.in_w, 2), ( │ corrected[foreground > 0] = 1
AssertionError: shape is (572, 487, 2) for tile from 2T4_20210502_111453.png

To Reproduce

1. Create a dataset with this image
2. Annotate it
3. Launch training

This is one of the images for which this bug happens

[Abe404]

Thanks for reporting this. The image appears to have some unusual orientation information in the EXIF metadata.

I have implemented a fix based on python-pillow/Pillow#4703 (comment)

And will hopefully have it in master before the end of today.

[Abe404]

Fixed in:

9893d23

I also removed the code that repeatedly logs 'no seg found' as that's not helpful for the debug output.