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sphn_rdf_schema_2023.2.ttl
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@prefix : <https://biomedit.ch/rdf/sphn-ontology/sphn#> .
@prefix chop: <https://biomedit.ch/rdf/sphn-resource/chop/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix geno: <http://purl.obolibrary.org/obo/GENO_> .
@prefix icd-10-gm: <https://biomedit.ch/rdf/sphn-resource/icd-10-gm/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix snomed: <http://snomed.info/id/> .
@prefix so: <http://purl.obolibrary.org/obo/SO_> .
@prefix sphn: <https://biomedit.ch/rdf/sphn-ontology/sphn#> .
@prefix sphn-atc: <https://biomedit.ch/rdf/sphn-resource/atc/> .
@prefix sphn-geno: <https://biomedit.ch/rdf/sphn-resource/geno/> .
@prefix sphn-hgnc: <https://biomedit.ch/rdf/sphn-resource/hgnc/> .
@prefix sphn-loinc: <https://biomedit.ch/rdf/sphn-resource/loinc/> .
@prefix sphn-so: <https://biomedit.ch/rdf/sphn-resource/so/> .
@prefix ucum: <https://biomedit.ch/rdf/sphn-resource/ucum/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
dc:description a owl:AnnotationProperty .
dc:title a owl:AnnotationProperty .
dcterms:license a owl:AnnotationProperty .
owl:deprecated a owl:AnnotationProperty .
owl:maxCardinality a owl:AnnotationProperty .
owl:minCardinality a owl:AnnotationProperty .
skos:note a owl:AnnotationProperty .
<https://biomedit.ch/rdf/sphn-ontology/sphn> a owl:Ontology ;
dc:description "The RDF schema describing concepts defined in the official SPHN dataset" ;
dc:rights "© Copyright 2023, Personalized Health Informatics Group (PHI), SIB Swiss Institute of Bioinformatics" ;
dc:title "The SPHN RDF Schema" ;
dcterms:license <https://creativecommons.org/licenses/by/4.0/> ;
owl:imports <http://snomed.info/sct/900000000000207008/version/20221231>,
<https://biomedit.ch/rdf/sphn-resource/atc/2023/1>,
<https://biomedit.ch/rdf/sphn-resource/chop/2023/4>,
sphn-geno:20220810,
sphn-hgnc:20221107,
<https://biomedit.ch/rdf/sphn-resource/icd-10-gm/2023/3>,
<https://biomedit.ch/rdf/sphn-resource/loinc/2.74/1>,
sphn-so:20211122,
<https://biomedit.ch/rdf/sphn-resource/ucum/2023/1> ;
owl:priorVersion <https://biomedit.ch/rdf/sphn-ontology/sphn/2022/2> ;
owl:versionIRI <https://biomedit.ch/rdf/sphn-ontology/sphn/2023/2> .
sphn:AcidCitrateDextrose a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Acid citrate dextrose" .
sphn:AddictionMedicine a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Addiction medicine" .
sphn:AlcoholBased a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:TumorSpecimen_fixationType ;
rdfs:label "Alcohol based" .
sphn:AldehydeBased a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:TumorSpecimen_fixationType ;
rdfs:label "Aldehyde based" .
sphn:AldehydeBasedStabilizerForCTCs a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Aldehyde-based stabilizer for CTCs" .
sphn:AllergologyAndClinicalImmunology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Allergology and clinical immunology" .
sphn:AllprotectTissueReagent a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:TumorSpecimen_fixationType ;
rdfs:label "Allprotect ® tissue reagent" .
sphn:Anaesthesiology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Anaesthesiology" .
sphn:Angiology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Angiology" .
sphn:Biochemical a owl:NamedIndividual,
sphn:OncologyTreatmentAssessment_progressionType ;
rdfs:label "biochemical" .
sphn:Biosample a owl:Class ;
rdfs:label "Biosample" ;
rdfs:comment "any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes" ;
rdfs:subClassOf sphn:Deprecated ;
owl:deprecated true ;
skos:definition "any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes" .
sphn:Biosample_primaryContainer sphn:replaces sphn:Biosample_primaryContainerType .
sphn:CT a owl:NamedIndividual,
sphn:DiagnosticRadiologicExamination_method ;
rdfs:label "CT" .
sphn:CardiacAndThoracicVascularSurgery a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Cardiac and thoracic vascular surgery" .
sphn:Cardiology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Cardiology" .
sphn:Catheter a owl:Class ;
rdfs:label "Catheter" ;
rdfs:comment "medical device composed of a tube of varying size and length" ;
rdfs:subClassOf sphn:Deprecated ;
owl:deprecated true ;
skos:definition "medical device composed of a tube of varying size and length" .
sphn:CellPreparationTubeCitrate a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Cell Preparation Tube® citrate" .
sphn:CellPreparationTubeHeparin a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Cell Preparation Tube® heparin" .
sphn:CentralVenousPressure a owl:Class ;
rdfs:label "Central Venous Pressure" ;
rdfs:comment "central venous pressure measured in the venae cavae" ;
rdfs:subClassOf sphn:Deprecated ;
owl:deprecated true ;
skos:definition "central venous pressure measured in the venae cavae" .
sphn:ChemicalAdditivesStabilizers a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Chemical additives / stabilizers" .
sphn:ChildAndAdolescentPsychiatryAndPsychotherapy a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Child and adolescent psychiatry and psychotherapy" .
sphn:ChildAndAdolescentPsychology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Child and adolescent psychology" .
sphn:ChiropracticSpecialist a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Chiropractic specialist" .
sphn:CitratePhosphateDextrose a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Citrate phosphate dextrose" .
sphn:ClinicalPharmacologyAndToxicology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Clinical pharmacology and toxicology" .
sphn:ClinicalPsychology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Clinical Psychology" .
sphn:CommunityPharmacy a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Community pharmacy" .
sphn:Complementary a owl:NamedIndividual,
sphn:FOPHDiagnosis_rank ;
rdfs:label "complementary" .
sphn:CompleteResponse a owl:NamedIndividual,
sphn:OncologyTreatmentAssessment_result ;
rdfs:label "complete response" .
sphn:CongenitalAbnormality a owl:NamedIndividual,
sphn:AdverseEvent_consequences ;
rdfs:label "Congenital abnormality" .
sphn:Death a owl:NamedIndividual,
sphn:AdverseEvent_consequences ;
rdfs:label "Death" .
sphn:DermatologyAndVenereology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Dermatology and venereology" .
sphn:DuBois a owl:NamedIndividual,
sphn:BodySurfaceArea_calculationMethod ;
rdfs:label "du bois" .
sphn:EDTAAndGel a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "EDTA and gel" .
sphn:EndocrinologyAndDiabetology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Endocrinology and Diabetology" .
sphn:Fatal a owl:NamedIndividual,
sphn:AdverseEvent_outcome ;
rdfs:label "Fatal" .
sphn:ForensicMedicine a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Forensic medicine" .
sphn:Gastroenterology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Gastroenterology" .
sphn:GeneralInternalMedicine a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "General internal medicine" .
sphn:GeneralMedicalPractitioner a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "General medical practitioner" .
sphn:GeneralMedicine a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "General medicine" .
sphn:GeriatricMedicine a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Geriatric medicine" .
sphn:Glass a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Glass" .
sphn:GreaterThan a owl:NamedIndividual,
sphn:Comparator ;
rdfs:label ">" .
sphn:GreaterThanOrEqual a owl:NamedIndividual,
sphn:Comparator ;
rdfs:label ">=" .
sphn:GynaecologyAndObstetrics a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Gynaecology and obstetrics" .
sphn:Haematology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Haematology" .
sphn:HandSurgery a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Hand surgery" .
sphn:HealthPsychology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Health Psychology" .
sphn:HeatStabilization a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:TumorSpecimen_fixationType ;
rdfs:label "Heat stabilization" .
sphn:Hirudin a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Hirudin" .
sphn:HospitalPharmacy a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Hospital pharmacy" .
sphn:HospitalisationOrProlongation a owl:NamedIndividual,
sphn:AdverseEvent_consequences ;
rdfs:label "Hospitalisation or prolongation" .
sphn:Infectology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Infectology" .
sphn:IntensiveCareMedicine a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Intensive care medicine" .
sphn:InterResidueCoordinates a owl:NamedIndividual,
sphn:GenomicPosition_coordinateConvention ;
rdfs:label "Inter-residue coordinates" .
sphn:InternalMedicine a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Internal medicine" .
sphn:LessThan a owl:NamedIndividual,
sphn:Comparator ;
rdfs:label "<" .
sphn:LessThanOrEqual a owl:NamedIndividual,
sphn:Comparator ;
rdfs:label "<=" .
sphn:LifeThreatening a owl:NamedIndividual,
sphn:AdverseEvent_consequences ;
rdfs:label "Life-threatening" .
sphn:LithiumHeparin a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Lithium heparin" .
sphn:LithiumHeparinAndGel a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Lithium heparin and gel" .
sphn:LithiumHeparinAndRubberPlug a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Lithium heparin and rubber plug" .
sphn:Localized a owl:NamedIndividual,
sphn:OncologyTreatmentAssessment_progressionType ;
rdfs:label "localized" .
sphn:MRI a owl:NamedIndividual,
sphn:DiagnosticRadiologicExamination_method ;
rdfs:label "MRI" .
sphn:MedicalGenetics a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Medical genetics" .
sphn:MedicalOncology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Medical oncology" .
sphn:Metastatic a owl:NamedIndividual,
sphn:OncologyTreatmentAssessment_progressionType ;
rdfs:label "metastatic" .
sphn:Mosteller a owl:NamedIndividual,
sphn:BodySurfaceArea_calculationMethod ;
rdfs:label "mosteller" .
sphn:Nephrology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Nephrology" .
sphn:Neurology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Neurology" .
sphn:Neuropsychology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Neuropsychology" .
sphn:Neurosurgery a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Neurosurgery" .
sphn:NeutralBufferedFormalin a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:TumorSpecimen_fixationType ;
rdfs:label "Neutral buffered formalin" .
sphn:NonAldehydeBasedStabilizerForCellFreeNucleicAcids a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Non-aldehyde-based stabilizer for cell-free nucleic acids" .
sphn:NonaldehydeBasedWithoutAceticAcid a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:TumorSpecimen_fixationType ;
rdfs:label "Nonaldehyde based without acetic acid" .
sphn:NonaldehydeWithAceticAcid a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:TumorSpecimen_fixationType ;
rdfs:label "Nonaldehyde with acetic acid" .
sphn:NonbufferedFormalin a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:TumorSpecimen_fixationType ;
rdfs:label "Nonbuffered formalin" .
sphn:NoneOfTheConsequencesMentioned a owl:NamedIndividual,
sphn:AdverseEvent_consequences ;
rdfs:label "None of the consequences mentioned" .
sphn:NotRecovered a owl:NamedIndividual,
sphn:AdverseEvent_outcome ;
rdfs:label "Not recovered" .
sphn:NuclearMedicine a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Nuclear medicine" .
sphn:OccupationalMedicine a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Occupational medicine" .
sphn:Ophthalmology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Ophthalmology" .
sphn:OptimumCuttingTemperatureMedium a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:TumorSpecimen_fixationType ;
rdfs:label "Optimum cutting temperature medium" .
sphn:OrageneCollectionContainerOrEquivalent a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Oragene collection container or equivalent" .
sphn:OralAndMaxillofacialSurgery a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Oral and maxillofacial surgery" .
sphn:OralSurgery a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Oral surgery" .
sphn:Orthodontics a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Orthodontics" .
sphn:OrthopaedicSurgeryAndTraumatologyOfTheLocomotorApparatus a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Orthopaedic surgery and traumatology of the locomotor apparatus" .
sphn:Other a owl:NamedIndividual,
sphn:BodySurfaceArea_calculationMethod,
sphn:Sample_fixationType,
sphn:Sample_primaryContainer,
sphn:TherapeuticArea_specialtyName,
sphn:TumorSpecimen_fixationType,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "other" .
sphn:Otorhinolaryngology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Otorhinolaryngology" .
sphn:PAXgeneBloodDNA a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "PAXgene® blood DNA" .
sphn:PAXgeneBloodRNAplus a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "PAXgene® blood RNA+" .
sphn:PAXgeneBoneMarrowRNA a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "PAXgene® bone marrow RNA" .
sphn:PAXgeneTissue a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:TumorSpecimen_fixationType ;
rdfs:label "PAXgene tissue" .
sphn:PET a owl:NamedIndividual,
sphn:DiagnosticRadiologicExamination_method ;
rdfs:label "PET" .
sphn:PETCT a owl:NamedIndividual,
sphn:DiagnosticRadiologicExamination_method ;
rdfs:label "PET CT" .
sphn:PaediatricSurgery a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Paediatric surgery" .
sphn:Paediatrics a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Paediatrics" .
sphn:PartialResponse a owl:NamedIndividual,
sphn:OncologyTreatmentAssessment_result ;
rdfs:label "partial response" .
sphn:Pathology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Pathology" .
sphn:Periodontics a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Periodontics" .
sphn:PermanentDamageOrDisability a owl:NamedIndividual,
sphn:AdverseEvent_consequences ;
rdfs:label "Permanent damage or disability" .
sphn:PharmaceuticalMedicine a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Pharmaceutical medicine" .
sphn:PhysicalFiltrationSystem a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Physical filtration system" .
sphn:PhysicalMedicineAndRehabilitation a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Physical medicine and rehabilitation" .
sphn:PlasticReconstructiveAndAestheticSurgery a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Plastic, reconstructive and aesthetic surgery" .
sphn:Pneumology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Pneumology" .
sphn:PolyethyleneTubeSterile a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Polyethylene tube sterile" .
sphn:PolypropyleneTubeSterile a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Polypropylene tube sterile" .
sphn:PotassiumEDTA a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Potassium EDTA" .
sphn:PreventionAndPublicHealth a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Prevention and public health" .
sphn:Principal a owl:NamedIndividual,
sphn:FOPHDiagnosis_rank,
sphn:FOPHProcedure_rank ;
rdfs:label "principal" .
sphn:ProgressiveDisease a owl:NamedIndividual,
sphn:OncologyTreatmentAssessment_result ;
rdfs:label "progressive disease" .
sphn:ProteaseInhibitors a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Protease inhibitors" .
sphn:PsychiatryAndPsychotherapy a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Psychiatry and psychotherapy" .
sphn:Psychotherapy a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Psychotherapy" .
sphn:RECIST1dot0 a owl:NamedIndividual,
sphn:OncologyTreatmentAssessment_criteria ;
rdfs:label "RECIST 1.0" .
sphn:RECIST1dot1 a owl:NamedIndividual,
sphn:OncologyTreatmentAssessment_criteria ;
rdfs:label "RECIST 1.1" .
sphn:RNALater a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_fixationType,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "RNA Later" .
sphn:RadioOncologyAndRadiotherapy a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Radio-oncology and radiotherapy" .
sphn:Radiology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Radiology" .
sphn:ReconstructiveDentistry a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Reconstructive dentistry" .
sphn:Recovered a owl:NamedIndividual,
sphn:AdverseEvent_outcome ;
rdfs:label "Recovered" .
sphn:Recovering a owl:NamedIndividual,
sphn:AdverseEvent_outcome ;
rdfs:label "Recovering" .
sphn:RecoveringWithSequelae a owl:NamedIndividual,
sphn:AdverseEvent_outcome ;
rdfs:label "Recovering with sequelae" .
sphn:Regional a owl:NamedIndividual,
sphn:OncologyTreatmentAssessment_progressionType ;
rdfs:label "regional" .
sphn:ResidueCoordinates a owl:NamedIndividual,
sphn:GenomicPosition_coordinateConvention ;
rdfs:label "Residue coordinates" .
sphn:Rheumatology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Rheumatology" .
sphn:S8820ProteaseInhibitorTabletsOrEquivalent a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "S8820 protease inhibitor tablets or equivalent" .
sphn:SPECT a owl:NamedIndividual,
sphn:DiagnosticRadiologicExamination_method ;
rdfs:label "SPECT" .
sphn:Secondary a owl:NamedIndividual,
sphn:FOPHDiagnosis_rank ;
rdfs:label "secondary" .
sphn:SerumSeparatorTubeWithClotActivator a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Serum separator tube with clot activator" .
sphn:SerumTubeWithoutClotActivator a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Serum tube without clot activator" .
sphn:SnapFreezing a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:TumorSpecimen_fixationType ;
rdfs:label "Snap freezing" .
sphn:SodiumCitrate a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Sodium citrate" .
sphn:SodiumEDTA a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Sodium EDTA" .
sphn:SodiumFluoridePotassiumOxalate a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Sodium fluoride/potassium oxalate" .
sphn:SodiumHeparin a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Sodium heparin" .
sphn:StableDisease a owl:NamedIndividual,
sphn:OncologyTreatmentAssessment_result ;
rdfs:label "stable disease" .
sphn:StoolCollectionContainerWithDNAStabilizer a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Stool collection container with DNA stabilizer" .
sphn:Supplementary a owl:NamedIndividual,
sphn:FOPHProcedure_rank ;
rdfs:label "supplementary" .
sphn:Surgery a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Surgery" .
sphn:TemporarilySeriousImpactMedicallyImportant a owl:NamedIndividual,
sphn:AdverseEvent_consequences ;
rdfs:label "Temporarily serious impact / medically important" .
sphn:TempusTube a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Tempus® tube" .
sphn:ThoracicSurgery a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Thoracic surgery" .
sphn:TraceElementsTube a owl:NamedIndividual,
sphn:Sample_primaryContainer,
sphn:TumorSpecimen_primaryContainer ;
rdfs:label "Trace elements tube" .
sphn:TraceableAuthorStatement a owl:NamedIndividual,
sphn:OncologyTreatmentAssessment_criteria ;
rdfs:label "traceable author statement" .
sphn:TropicalAndTravelMedicine a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Tropical and travel medicine" .
sphn:Urology a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Urology" .
sphn:VacuumTechnologyStabilization a owl:NamedIndividual,
sphn:Sample_fixationType,
sphn:TumorSpecimen_fixationType ;
rdfs:label "Vacuum technology stabilization" .
sphn:VascularSurgery a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Vascular surgery" .
sphn:VisceralMedicine a owl:NamedIndividual,
sphn:TherapeuticArea_specialtyName ;
rdfs:label "Visceral medicine" .
sphn:X-ray a owl:NamedIndividual,
sphn:DiagnosticRadiologicExamination_method ;
rdfs:label "X-ray" .
sphn:hasAdministrableDoseForm sphn:replaces sphn:hasGalenicCode .
sphn:hasClass sphn:replaces sphn:hasLocationClass .
sphn:hasMaterialTypeLiquid sphn:replaces sphn:hasBiosampleMaterialTypeLiquid .
sphn:hasMaterialTypeTissue sphn:replaces sphn:hasBiosampleMaterialTypeTissue .
sphn:hasPhysiologicStateCode sphn:replaces sphn:hasHeartRatePhysiologicStateCode .
sphn:hasStorageContainer sphn:replaces sphn:hasBiosampleStorageContainer .
sphn:hasSubstanceCategory sphn:replaces sphn:hasAllergySubstanceCategory .
sphn:replaces a owl:AnnotationProperty ;
rdfs:label "replaces" ;
rdfs:comment "Property that links the new version of an SPHN class replacing an SPHN old class" ;
skos:definition "Property that links the new version of an SPHN class replacing an SPHN old class" .
sphn-geno:GENO rdfs:subClassOf sphn:Terminology .
sphn-hgnc:HGNC rdfs:subClassOf sphn:Terminology .
sphn-so:SO rdfs:subClassOf sphn:Terminology .
snomed:138875005 rdfs:subClassOf sphn:Terminology .
xsd:gDay a rdfs:Datatype .
xsd:gMonth a rdfs:Datatype .
xsd:gYear a rdfs:Datatype .
xsd:time a rdfs:Datatype .
sphn:SystemicArterialBloodPressure a owl:Class ;
rdfs:label "Systemic Arterial Blood Pressure" ;
rdfs:comment "arterial blood pressure in systemic circulation" ;
rdfs:subClassOf sphn:Deprecated ;
owl:deprecated true ;
skos:definition "arterial blood pressure in systemic circulation" .
sphn:hasActiveIngredient a owl:ObjectProperty ;
rdfs:label "has active ingredient" ;
rdfs:comment "pharmaceutically active component of the concept" ;
rdfs:domain sphn:Drug ;
rdfs:range sphn:Substance ;
rdfs:subPropertyOf sphn:SPHNAttributeObject ;
skos:definition "pharmaceutically active component of the concept" ;
sphn:replaces sphn:hasDrugActiveIngredientSubstance .
sphn:hasDataFile a owl:ObjectProperty ;
rdfs:label "has data file" ;
rdfs:comment "data file associated to the concept" ;
rdfs:domain sphn:Electrocardiogram ;
rdfs:range sphn:DataFile ;
rdfs:subPropertyOf sphn:SPHNAttributeObject ;
skos:definition "data file associated to the concept" .
sphn:hasInactiveIngredient a owl:ObjectProperty ;
rdfs:label "has inactive ingredient" ;
rdfs:comment "inert ingredients or excipients, and generally have no pharmacological effect of the concept" ;
rdfs:domain sphn:Drug ;
rdfs:range sphn:Substance ;
rdfs:subPropertyOf sphn:SPHNAttributeObject ;
skos:definition "inert ingredients or excipients, and generally have no pharmacological effect of the concept" ;
sphn:replaces sphn:hasDrugInactiveIngredientSubstance .
sphn:hasTranscript a owl:ObjectProperty ;
rdfs:label "has transcript" ;
rdfs:comment "RNA product of the concept" ;
rdfs:domain sphn:Gene ;
rdfs:range sphn:Transcript ;
rdfs:subPropertyOf sphn:SPHNAttributeObject ;
skos:definition "RNA product of the concept" .
sphn-atc:ATC rdfs:subClassOf sphn:Terminology .
chop:CHOP rdfs:subClassOf sphn:Terminology .
icd-10-gm:ICD-10-GM rdfs:subClassOf sphn:Terminology .
sphn-loinc:LOINC rdfs:subClassOf sphn:Terminology .
ucum:UCUM rdfs:subClassOf sphn:Terminology .
sphn:Allergen a owl:Class ;
rdfs:label "Allergen" ;
rdfs:comment "any substance, product or physical force producing immediate hypersensitivity" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
owl:unionOf ( sphn:Code snomed:138875005 sphn-atc:ATC ) ] ] ) ],
sphn:SPHNConcept ;
skos:definition "any substance, product or physical force producing immediate hypersensitivity" ;
skos:note "sphn:hasCode allowed coding system: SNOMED CT, ATC, GTIN" .
sphn:Chromosome a owl:Class ;
rdfs:label "Chromosome" ;
rdfs:comment "thread-like structure composed of tightly coiled DNA and histones or circular DNA (mitochondrial DNA). These structures act as carriers of genetic information" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom snomed:91272006 ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:91272006,
loinc:48000-4 ;
skos:definition "thread-like structure composed of tightly coiled DNA and histones or circular DNA (mitochondrial DNA). These structures act as carriers of genetic information" .
sphn:DataProviderInstitute a owl:Class ;
rdfs:label "Data Provider Institute" ;
rdfs:comment "institute providing the data" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom sphn:Code ] ) ],
sphn:SPHNConcept ;
skos:definition "institute providing the data" ;
skos:note "sphn:hasCode allowed coding system: UID" .
sphn:DataRelease a owl:Class ;
rdfs:label "Data Release" ;
rdfs:comment "Metadata about the release of the data" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasExtractionDateTime ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasExtractionDateTime ] ) ],
sphn:SPHNConcept ;
skos:definition "Metadata about the release of the data" .
sphn:Electrocardiogram a owl:Class ;
rdfs:label "Electrocardiogram" ;
rdfs:comment "output of an electrocardiographic procedure" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasDataFile ],
sphn:SPHNConcept ;
skos:definition "output of an electrocardiographic procedure" .
sphn:Laterality a owl:Class ;
rdfs:label "Laterality" ;
rdfs:comment "localization with respect to the side of the body" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
owl:unionOf ( snomed:7771000 snomed:24028007 snomed:51440002 snomed:66459002 ) ] ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass loinc:20228-3 ;
skos:definition "localization with respect to the side of the body" ;
skos:scopeNote "sphn:hasCode no subclasses allowed" .
sphn:MeasurementMethod a owl:Class ;
rdfs:label "Measurement Method" ;
rdfs:comment "procedure used to measure an amount, quantity, size, level, extent, or magnitude, resulting in an qualitative or quantitative value" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom snomed:128927009 ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:122869004 ;
skos:definition "procedure used to measure an amount, quantity, size, level, extent, or magnitude, resulting in an qualitative or quantitative value" .
sphn:Organism a owl:Class ;
rdfs:label "Organism" ;
rdfs:comment "living system capable of replicating or reproducing, growth and maintenance. An organism may be unicellular or multicellular" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
owl:unionOf ( snomed:410607006 sphn:Code ) ] ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:410607006 ;
skos:definition "living system capable of replicating or reproducing, growth and maintenance. An organism may be unicellular or multicellular" ;
skos:note "sphn:hasCode allowed coding system: SNOMED CT, NCBI Taxon" .
sphn:PharmaceuticalDoseForm a owl:Class ;
rdfs:label "Pharmaceutical Dose Form" ;
rdfs:comment "physical manifestation of a product that contains the active ingredient(s) and/or inactive ingredient(s) that are intended to be delivered to the patient" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom [ a owl:Class ;
owl:unionOf ( snomed:736542009 sphn:Code ) ] ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:736542009,
loinc:74055-5 ;
skos:definition "physical manifestation of a product that contains the active ingredient(s) and/or inactive ingredient(s) that are intended to be delivered to the patient" ;
skos:note "sphn:hasCode allowed coding system: SNOMED CT, EDQM:EDQMPDF" .
sphn:PhysiologicState a owl:Class ;
rdfs:label "Physiologic State" ;
rdfs:comment "physiologic state of the individual, e.g. resting, exercise" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:onProperty sphn:hasCode ;
owl:someValuesFrom snomed:128973006 ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:128973006 ;
skos:definition "physiologic state of the individual, e.g. resting, exercise" .
sphn:Reference a owl:Class ;
rdfs:label "Reference" ;
rdfs:comment "reference construct used for comparison purposes" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass geno:0000152 ;
skos:definition "reference construct used for comparison purposes" ;
skos:note "sphn:hasCode allowed coding system: NCBI GenBank or other" .
sphn:TherapeuticArea a owl:Class ;
rdfs:label "Therapeutic Area" ;
rdfs:comment "professional health care specialization" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSpecialtyName ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasSpecialtyName ] [ a owl:Restriction ;
owl:onProperty sphn:hasSpecialtyName ;
owl:someValuesFrom sphn:TherapeuticArea_specialtyName ] ) ],
sphn:SPHNConcept ;
owl:equivalentClass snomed:394658006 ;
skos:definition "professional health care specialization" .
sphn:Unit a owl:Class ;
rdfs:label "Unit" ;
rdfs:comment "unit of measurement" ;
rdfs:subClassOf [ a owl:Class ;
owl:intersectionOf ( [ a owl:Restriction ;
owl:minCardinality "1"^^xsd:nonNegativeInteger ;
owl:onProperty sphn:hasCode ] [ a owl:Restriction ;
owl:maxCardinality "1"^^xsd:nonNegativeInteger ;