-
Notifications
You must be signed in to change notification settings - Fork 3
/
Copy pathCHANGELOG
91 lines (72 loc) · 4.17 KB
/
CHANGELOG
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
v2.6.0 - 25 Oct 2024
* Added support for searching by UniProt sequence checksum for both summary and details endpoints to allow for more flexible searching
* Added optional fields "annotation_value" and "unit" to UniProt annotations endpoint to support exposing any additional information that may be available for a given annotation
* Added contact and license information to the specification
v2.5.1 - 21 Feb 2024
* Updated chain_ids array description for the summary endpoint
v2.4.2 - 03 May 2023
* Removed CA_BIND and DNA_BIND. Will use BINDING instead
v2.4.1 - 26 Apr 2023
* Add required field "annotation_type" to uniprot annotations endpoint
v2.4.0 - 1 Feb 2023
* Updated annotations enums
v2.3.0 - 11 Jan 2023
* Added sequence search POST endpoint
* Added sequence_request to schema
* Added job_id to schema
* Added sequence search result GET endpoint
* Added sequence_search_result to schema
* Added search_accession to schema
* Added hsp to schema
v2.2.0 - 11 Jan 2023
* Added for UniProt summary POST endpoint
* Added accession_list_request to schema
v1.3.0 - 16 Mar 2022
* structures.entities.entity_type enum was updated
* structures.entities.entity_poly_type was added
* structures.model_category enum was updated
* structures.provider enum was updated
* structures.confidence_avg_local_score description was updated
* uniprot_keyed.uniprot_md5 renamed to uniprot_checksum
v1.2.1 - 19 Jan 2022
* Changing pdb_entry.uniprot_start to mandatory
* Changing pdb_entry.uniprot_end to mandatory
* Changing structures.uniprot_start to mandatory
* Changing structures.uniprot_end to mandatory
* Added entities sub-dictionary (entity_type, identifier, identifier_type, description, chain_ids)
* Removed macromolecules sub-dictionary
* Removed ligand sub-dictionary
* Added more description to structures.coverage
* Added more description to structures.model_type
* Added note that numbering is 1-indexed to uniprot_entry.segment_start
* Added note that numbering is 1-indexed to uniprot_entry.segment_end
* Added note that numbering is 1-indexed to pdb_entry.uniprot_start
* Added note that numbering is 1-indexed to pdb_entry.uniprot_end
* Added note that numbering is 1-indexed to structures.uniprot_start
* Added note that numbering is 1-indexed to structures.uniprot_end
* Added note that numbering is 1-indexed to structures.chains.segments.seqres.from
* Added note that numbering is 1-indexed to structures.chains.segments.seqres.to
* Added note that numbering is 1-indexed to structures.chains.segments.uniprot.from
* Added note that numbering is 1-indexed to structures.chains.segments.uniprot.to
* Added note that range is [0, 1] to structures.sequence_identity
* Added note that range is [0, 1] to structures.coverage
* Added note that range is [0, 1] to structures.confidence_avg_local_score
* Added note that range is [0, 1] to 1-indexed to structures.chains.templates.template_sequence_identity
* Added note that range is [0, 1] to 1-indexed to structures.chains.segments.residues.confidence
* Added enumeration of [‘pLDDT’, ‘QMEANDisCo’] to structures.confidence_avg_local_score
* Added note that for theoretical models the field is mandatory for structures.confidence_type
* Added note that for theoretical models the field is mandatory for structures.confidence_version
* Added note that for theoretical models the field is mandatory for structures.confidence_avg_local_score
v1.0.0 - 9 Sep 2021
* Updated the result.structures.provider enumeration to match the exact resource names, e.g. SWISS-MODEL instead of SWISSMODEL and PDBe instead of PDBE.
* Added a new schema for annotations, called "unp_annotations"
* Renamed result.structures.model_category.TEMPLATE-FREE to AB-INITIO
* Added enumeration for result.structures.oligo_state [MONOMER, HOMODIMER, HETERODIMER, HOMO-OLIGOMER, HETERO-OLIGOMER]
* Added result.structures.experimental_method
* Added result.model_type enum of [ATOMIC, DUMMY]
* Added result.structures.model_page_url
* Added result.structures.number_of_conformers
* Added result.structures.ensemble_sample_url
* Added result.structures.confidence_type
v0.5.1 - 3 Mar 2021
* Added "model_format" as enum of PDB, MMCIF and BCIF to specify file format used for coordinates (“model_url”)